Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1954 ATGTCTAGCAGGAGGTCACGGTCAAGGCAAACAGGTAGTTCAAGGAATATCACCGATGATCAGATCAACGATCTTGTCTCCAAGTTGCAACAGCTTCTTCCAGAGATACGCGATAGGCGCTCAGATAAGGTTTCAGCTTCGAAGGTGTTGCAAGAGACATGCAACTATATAAGAAGCTTACACAGGGAAGTGGACGACCTAAGCGAGCGTTTGTCTGAGCTATTGGCAACAACTGACAGTGCACAAGCTGCAATAATTAGAAATTTACTTATGCAATAG 279 0.4444 MSSRRSRSRQTGSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATTDSAQAAIIRNLLMQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1954 92 Coils Coil 57 77 - -
Pvu9g1954 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
Pvu9g1954 92 Gene3D - 19 88 IPR036638 GO:0046983
Pvu9g1954 92 MobiDBLite consensus disorder prediction 1 20 - -
Pvu9g1954 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Pvu9g1954 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Pvu9g1954 92 CDD bHLH_AtPRE_like 17 77 - -
Pvu9g1954 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Pvu9g1954 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1954 Pvu-Chr9 28056083 28057570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1954 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 74.194 6.31e-41 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu9g1954 HLH 6.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1954 - - gmx:100527636 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0425 8 3604196 3606439 Pvu9g1954 9 28056083 28057570 ECH
Pvu2g0912 2 14290925 14292389 Pvu9g1954 9 28056083 28057570 ECH
Pvu9g1954 9 28056083 28057570 Pvu9g1954 9 28056083 28057570 ECH