Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1950 ATGTCTGGCAGGAGAAACTCCAGAACTTCAAAATTCACAGAAAGTGGGATTAATGATCTAATGATGAGGCTACAAGCACTGCTGCCAAAACTAAACCAAAGAAGCGACTCAAGGGTATTACACACCAAGGCATCAGTAAGCATGATGCAGATCATAAAGGAAACTTGCTCTCACATCAGTATGCTTCAGAGAGAGGTAAAAGAGCATGGTGAAAGGCTAGCAGAGTTAGTGAATTCTGCATACACTAGTGATGTTGACGAGGAGTGTCTTAGAAAACTTCATCTCTGA 288 0.4167 MSGRRNSRTSKFTESGINDLMMRLQALLPKLNQRSDSRVLHTKASVSMMQIIKETCSHISMLQREVKEHGERLAELVNSAYTSDVDEECLRKLHL* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1950 95 Coils Coil 59 79 - -
Pvu9g1950 95 PANTHER DNA BINDING PROTEIN 1 93 IPR044172 -
Pvu9g1950 95 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 80 IPR036638 GO:0046983
Pvu9g1950 95 PANTHER DNA BINDING PROTEIN 1 93 - -
Pvu9g1950 95 Gene3D - 8 89 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1950 Pvu-Chr9 27971210 27971969 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1950 12 83 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 39.189 1.79e-10 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1950 - K03657 pvu:PHAVU_009G188800g 187.193