Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1948 ATGGTGCACGTTTCGTTTTACAGGAACTATGGAAAGACGTTTAAGAAGCCGCGTCGTCCGTACGAGAAGGAGCGTCTGGACGCGGAGCTGAAACTGGTGGGGGAGTACGGCCTGCGCTGCAAGAGGGAGCTGTGGAGGGTGCAGTACGCCCTCAGCCGTATCCGCAACAACGCGCGTAACCTCCTCACTCTCGACGAGAAGAACCCGCGTCGGATCTTTGAGGGCGAGGCTCTCCTCCGCCGCATGTTCCGCTACGGTCTCCTCGACGAGACCCAGAACAAACTCGATTACGTCCTCGCTCTCACGGTCGAGAACTTCTTAGAGCGCCGCCTCCAGACCCTCGTCTTCAAGTCCGGCATGGCCAAGTCCATCCACCATGCCAGGGTTCTCATCAAGCAGAGACACATCAGGGTTGGTAGGCAAGTGGTGAACATCCCGTCTTTCTTGGTGAGGGTGGACTCACAGAAGCACATTGACTTTTCACTTACAAGTCCCCTTGGTGGAGGACGCCCTGGAAGAGTGAAGAGAAGGAACCAAAGGGCTGCTGCTAAGAAGGCATCAGGTGGAGATGGAGATGAAGAAGATGAGGATTAG 594 0.5606 MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIKQRHIRVGRQVVNIPSFLVRVDSQKHIDFSLTSPLGGGRPGRVKRRNQRAAAKKASGGDGDEEDED* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1948 197 MobiDBLite consensus disorder prediction 161 197 - -
Pvu9g1948 197 Gene3D - 108 164 IPR036986 GO:0003723
Pvu9g1948 197 PANTHER 40S RIBOSOMAL PROTEIN S9-2-LIKE 5 197 - -
Pvu9g1948 197 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Pvu9g1948 197 SUPERFAMILY Alpha-L RNA-binding motif 12 158 - -
Pvu9g1948 197 SMART s4_6 109 180 IPR002942 GO:0003723
Pvu9g1948 197 CDD S4 109 153 - -
Pvu9g1948 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 197 IPR022801 -
Pvu9g1948 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Pvu9g1948 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Pvu9g1948 197 TIGRFAM uS4_arch: ribosomal protein uS4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Pvu9g1948 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Pvu9g1948 197 Pfam S4 domain 109 152 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1948 Pvu-Chr9 27962020 27963824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1948 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 91.979 7.43e-127 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1948 K02997 - gmx:100790098 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1976 3 40350368 40351795 Pvu9g1948 9 27962020 27963824 ECH
Pvu9g1948 9 27962020 27963824 Pvu9g1948 9 27962020 27963824 ECH