Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1943 ATGGAGGGAGGTGATGATTTCCACCACCACCACCATCACCATCACCACCACCACCAACACCGACAAGACTTCCCATTCCAACTCCTCGAGAAGAAAGAAGACCAAGACCCCTCTTCTTGCTCCACTTCCTCCCCATACCCTTCCCTAGCCATCTCAGCCGAACCCTCCACCTCCAACTCAACCCCATCCAACAACAACACCGCCCTCATCCCCACACAATCTGAGTCCTCCCCCAAAAAGCCACCTCCCAAAAGAACCTCCACCAAAGACCGCCACACCAAAGTCGACGGCCGCGGTCGCCGAATTCGAATGCCTGCTCTCTGCGCTGCCAGAGTCTTCCAGCTCACGCGGGAGCTTGGACACAAGTCTGACGGCGAGACCATAGAGTGGCTCCTCCAGCAGGCGGAGCCATCTGTCATCGCCGCCACCGGCACCGGTACCATCCCCGCTAACTTCACATCCCTTAACATATCTCACCGGAGCTCGGGCTCCTCCATATCCGTCCCCTCCCAGCTGCGATCCAACTACTTCAATTCAAACTTTTCTCTCCAACCCCGGAGAAGCCTGTTCCTTGAAAACACCAATACTTCCACAACACTCCTCAATTTTCAATCCAACAACCCCATCTCCACTTCCATGTTCCAACCCAAGCACGAATTGCGCGATTCATCATCCCTAGACTTGTCCTCGGAGAACAACGAAGAGGGTTTGGGAAGGAAAAGACGACCCTTGGAGCAAGACCTATCCTCAACCATGCAACACCAAGTTGGAAGCTATTTGATGCAATCAAGCAGCTCAGGGACAATTCCGGAGAGCCATGCTCAAATTCCGGCGAATATATGGATGGTGGCGAATTCCAATAGCCAAGGTGTGAGTGGTGAAGCTCCTTTGTGGACATTCCCCGGTGTGAGTAACAGTGCTTTGTATAGAGGAAACATGTCAAGTGGGTTGCATTTCATGAACTTTCCTACCCCTATGGCCCTTTTACCTGGTCAACAATTAGGGTCTTCAGGGATTGGTGGGAACATCAACGAAGGGCATTTGAGCATGCTTTCGGGGCTTAATCCTTACCGGACGGTCATCGGCGTTTCGGAATCTCAGGCGAGTGAGTCACACTCACATCACGGTGGAAGCGAGGATCGGCACGATGATAATTAA 1158 0.5268 MEGGDDFHHHHHHHHHHHQHRQDFPFQLLEKKEDQDPSSCSTSSPYPSLAISAEPSTSNSTPSNNNTALIPTQSESSPKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISHRSSGSSISVPSQLRSNYFNSNFSLQPRRSLFLENTNTSTTLLNFQSNNPISTSMFQPKHELRDSSSLDLSSENNEEGLGRKRRPLEQDLSSTMQHQVGSYLMQSSSSGTIPESHAQIPANIWMVANSNSQGVSGEAPLWTFPGVSNSALYRGNMSSGLHFMNFPTPMALLPGQQLGSSGIGGNINEGHLSMLSGLNPYRTVIGVSESQASESHSHHGGSEDRHDDN* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1943 385 MobiDBLite consensus disorder prediction 22 37 - -
Pvu9g1943 385 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 12 384 - -
Pvu9g1943 385 MobiDBLite consensus disorder prediction 212 252 - -
Pvu9g1943 385 MobiDBLite consensus disorder prediction 38 81 - -
Pvu9g1943 385 Pfam TCP family transcription factor 86 244 IPR017887 -
Pvu9g1943 385 MobiDBLite consensus disorder prediction 365 385 - -
Pvu9g1943 385 MobiDBLite consensus disorder prediction 1 101 - -
Pvu9g1943 385 ProSiteProfiles TCP domain profile. 88 142 IPR017887 -
Pvu9g1943 385 MobiDBLite consensus disorder prediction 233 247 - -
Pvu9g1943 385 MobiDBLite consensus disorder prediction 82 101 - -
Pvu9g1943 385 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 384 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1943 Pvu-Chr9 27886496 27889348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1943 69 384 TCP Transcription Factor Family AT3G47620 44.952 6.02e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu9g1943 TCP 7.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1943 - - gmx:100809154 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1973 3 40318574 40321385 Pvu9g1943 9 27886496 27889348 ECH
Pvu9g1943 9 27886496 27889348 Pvu9g1943 9 27886496 27889348 ECH