Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1939 ATGGGAAGACCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGGCCATGGACTCCTGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAGCATGGACCCGGGAACTGGAGACTGGTTCCCTCTAATACAGGGTTGATGAGATGCAGCAAAAGCTGCAGACTCAGATGGACCAACTATCTCCGACCAGGAATCAAACGAGGCAATTTCACCGATCATGAAGAGAAAATGATAATCCACCTCCAAGCCCTTTTGGGTAACAGATGGGCTGCAATAGCCTCCTATCTTCCACAGAGGACAGACAATGACATCAAGAACTATTGGAATACCCATTTGAAGAAGAAGCTGAAGAAGATGCAAACTGAGGGTGATGATGAAGGTAACAATTATGAGAAGGGGAACTCTTGTTCGCAGCTAAAGGGTCAGTGGGAGAGAAGACTTCAAACAGATATCCACACGGCCAAACAAGCCTTATGTGAAGCTTTGTCCCTTGACAAACCAACCCAAATTTTCCCTGAGACCAAATTACCCTCCACTTCTTCTAAATGTTTCCATGATCACCACCACCCCACATCACCAAACCAAACATCCTTGTACGCCTCAAGCACAGAAAACATAGCCAGGTTGCTGGACAATTGGATGAAGAAATCCCCAAAAAAAACCGAAACAAACTACTCCATCAGCAACATGGTAACCACAGGGTCTAGTTCCAGTGAGGGAACACAAAGCACCGTCACATGCACACAGGACCACCTTGACTCCTTGTGGAGCTTCAAGTCTGAACGTTCACCTGAAGAAAATACCAACTTGGTCGAGAGCAAGCCGAATCTAGAGACGCAAGTGCCTCTAATGTTACTGGAGAATTGGCTTTTCGATGATGCTGCACCTCAGTGCAACGAAGATCTCATGAACATGTCACTAGGGGAAAGTACAGATGGGTTGTTCTAG 948 0.4589 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRLVPSNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQTEGDDEGNNYEKGNSCSQLKGQWERRLQTDIHTAKQALCEALSLDKPTQIFPETKLPSTSSKCFHDHHHPTSPNQTSLYASSTENIARLLDNWMKKSPKKTETNYSISNMVTTGSSSSEGTQSTVTCTQDHLDSLWSFKSERSPEENTNLVESKPNLETQVPLMLLENWLFDDAAPQCNEDLMNMSLGESTDGLF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1939 315 CDD SANT 69 112 IPR001005 -
Pvu9g1939 315 Gene3D - 13 66 - -
Pvu9g1939 315 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 300 - -
Pvu9g1939 315 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu9g1939 315 CDD SANT 16 61 IPR001005 -
Pvu9g1939 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 300 - -
Pvu9g1939 315 SMART sant 66 114 IPR001005 -
Pvu9g1939 315 SMART sant 13 63 IPR001005 -
Pvu9g1939 315 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu9g1939 315 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu9g1939 315 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu9g1939 315 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu9g1939 315 Gene3D - 68 140 - -
Pvu9g1939 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pvu9g1939 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1939 Pvu-Chr9 27791297 27793009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1939 1 315 MYB Transcription Factor Family AT5G62470 50.685 1.73e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu9g1939 Myb_DNA-binding 7.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1939 K09422 - gmx:100807020 542.347