Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1933 ATGCGGGAGGAAGTGGTTTTATCTGTTGTTGATCCTCTTCTTATAGCATCTTCACCTTTGCAACCCCAGCATGGTGGTGATGCTGGAGATTCACTCATTGAGGGTGCTACTCATGTCAATGATGTTGGGGAATGTGATACTTTGGAAGAACAGGCACAGGAACAGGAACAAGAGCAAGAAAAAGACCTCACTCTAATGGTGGAGTGTCGCATTTGCCAGGAAGATGATACTCTTCAAAATTTGGACATACCCTGTGCATGCAAGGGAACCTTGAAGTTTGCTCATAGGGAATGTGTTCAGCTATGGTGTTACGAGAAGGGTGATACAATTTGTGAGATCTGCCACCAGCCATTCAAACCTGGCTATTCTGTGACAACAACTGTCATCCATCCTGGAGATACTTCAATTGATATTAGTGATGACTGGGCAAGCTATAATTTTCCTTTAGATTTGCACAATTCTCGCCTTTTGGCTATTGCAGCTGTAGAGCACCAAGTTCCGGAGACTGGTGAAGATTATGCCTATGCTGCTGGCACTGGTGGAATTACATTATGGCACTCTGTTGGTCTAATTTTAATGGCTCTTTTACTTCTGAGGCATGTTGCTCCCCTCTTCAATGCTGATGTGGAGAAAGCTTTAACATATTTTTATTTTTTCTTTCTTCGTGCGGCTGCTGTTGTCCTTCCTTGCTATCTTATGGCTTGGATAATTCGCGTAATACTGCATCAAAGGCAAAGACAACAAGCACCTGAAGAACTTGCATTTGTGCTACAAGCAGACGAACAAGAAATTGTAGTTGGATCAGAGGTGCTGGAGAATAAGATCTGA 828 0.4312 MREEVVLSVVDPLLIASSPLQPQHGGDAGDSLIEGATHVNDVGECDTLEEQAQEQEQEQEKDLTLMVECRICQEDDTLQNLDIPCACKGTLKFAHRECVQLWCYEKGDTICEICHQPFKPGYSVTTTVIHPGDTSIDISDDWASYNFPLDLHNSRLLAIAAVEHQVPETGEDYAYAAGTGGITLWHSVGLILMALLLLRHVAPLFNADVEKALTYFYFFFLRAAAVVLPCYLMAWIIRVILHQRQRQQAPEELAFVLQADEQEIVVGSEVLENKI* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1933 275 Coils Coil 45 65 - -
Pvu9g1933 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 120 IPR013083 -
Pvu9g1933 275 ProSiteProfiles Zinc finger RING-CH-type profile. 61 121 IPR011016 GO:0008270
Pvu9g1933 275 CDD RING_CH-C4HC3_MARCH 69 115 - -
Pvu9g1933 275 Pfam Protein of unknown function (DUF3675) 120 237 IPR022143 -
Pvu9g1933 275 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 262 IPR033275 -
Pvu9g1933 275 Pfam RING-variant domain 69 114 IPR011016 GO:0008270
Pvu9g1933 275 PANTHER OS11G0600700 PROTEIN 1 262 - -
Pvu9g1933 275 SUPERFAMILY RING/U-box 67 119 - -
Pvu9g1933 275 SMART ringv_2 68 115 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1933 Pvu-Chr9 27673565 27678227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1933 68 116 C3H Transcription Factor Family AT2G37950 40.385 7.46e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1933 - - vra:106756822 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1933 9 27673565 27678227 Pvu9g1933 9 27673565 27678227 ECH