Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1926 ATGGTGCTTTTGGGGCTTCTCTTTCTGGGGTTTCTTTCTCTGGCTTCACCTGTCTCTGCTGCTTCTGATTATGGTTGGATGAGTGCTCATGCAACCTTTTATGGAGGGGGTGATGCTTCTGGCACTATGGGTGGAGCATGTGGGTATGGGAACTTGTATAGCCAGGGTTATGGAACAAACAGTGCTGCTTTGAGCACAGCTTTGTTCAACAATGGTTTAAGCTGTGGGGCATGTTTCGAGATTAAGTGTGTTGATGACAAAAGGTGGTGCCTTCCACGCTCAGTTGTGGTCACTGCAACCAATTTCTGTCCCCCAAACAATGCCCTCCCTAACACTGCAGGAGGATGGTGCAACCCTCCCCTTCACCATTTCGACCTTTCTCAACCTATCTTCCAACAAATTGCTCAATACAGAGCTGGAATAGTACCCATCGCTTACAGAAGGGTCCCTTGCCAAAAGAGAGGGGGCATCAGATTCACCATCAACGGCCACTCATACTTCAACCTAATTCTGGTCACCAACGTTGGAGGTGCTGGTGATGTTCATGGAGTTTCCATCAAAGGTTCAAGAACAAATTGGCAAACTCTGACAAGAAACTGGGGTCAGAACTGGCAAAGCAACGCTTACCTCAATGGACAAAGCCTCTCTTTTAAGGTTACCACCAGCGATGGACGCACCGTGGTCTCTTATAATGTTGCACCCCCAAGTTGGTCCTTTGGCCAAACCTTCAACGGCCACCAATTCATTTAA 750 0.48 MVLLGLLFLGFLSLASPVSAASDYGWMSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNSAALSTALFNNGLSCGACFEIKCVDDKRWCLPRSVVVTATNFCPPNNALPNTAGGWCNPPLHHFDLSQPIFQQIAQYRAGIVPIAYRRVPCQKRGGIRFTINGHSYFNLILVTNVGGAGDVHGVSIKGSRTNWQTLTRNWGQNWQSNAYLNGQSLSFKVTTSDGRTVVSYNVAPPSWSFGQTFNGHQFI* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1926 249 Gene3D - 156 248 IPR036749 -
Pvu9g1926 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Pvu9g1926 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Pvu9g1926 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Pvu9g1926 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Pvu9g1926 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Pvu9g1926 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Pvu9g1926 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Pvu9g1926 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Pvu9g1926 249 PANTHER EXPANSIN-A15 9 248 IPR002963 GO:0009664
Pvu9g1926 249 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Pvu9g1926 249 SMART dpbb_1 61 146 IPR007112 -
Pvu9g1926 249 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Pvu9g1926 249 Gene3D - 13 152 IPR036908 -
Pvu9g1926 249 PANTHER EXPANSIN 9 248 - -
Pvu9g1926 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Pvu9g1926 249 Pfam Lytic transglycolase 62 146 IPR009009 -
Pvu9g1926 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Pvu9g1926 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Pvu9g1926 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Pvu9g1926 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Pvu9g1926 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Pvu9g1926 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Pvu9g1926 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Pvu9g1926 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Pvu9g1926 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1926 Pvu-Chr9 27567879 27570714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1926 1 248 Expansin Gene Family AT2G03090 77.823 1.52e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1926 - K20628 gmx:100802401 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g1752 2 31496697 31498796 Pvu9g1926 9 27567879 27570714 ECH
Pvu9g1926 9 27567879 27570714 Pvu9g1926 9 27567879 27570714 ECH