Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1911 ATGGCTTCGTCTCTTTCCCCTTCTCCCGCTTCTCTCGACCAAACCCTTCGCGACGTCGACGACTACGTTTTGGAAAATAAGGCAGAAGATTTGTCATGGGATACAATACACTACGTTTACGAGCTTGTGCAGAACGGCAATGCTGCGTTTCGAGAGAACAGAATGGAAGAGGCAATCAATTTTTACTCCAGAGCCAATAACATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTATATTAGGATTAGCCAATATTTCATTAGCAGAACACCATCATCTTCAGAATGTAGGCCATTGAGTGGGCTTGAACCCACAACACTTGCTGAATTGGCTTTGAAGGATGCTGAAAAGCTTGTTGAACTCCAAAGTAATGTAGCAAAATCATATCTTTTAAAGGCCAATGCTCTTCTCCTGTTAGAGAAATATGAAAAAGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATATAGAAAGAGTTTCATCTAGTTCAACAGGGACGAGTACACATGGACAACCCGAGCGTAATGATGATTTTGATTGCACTCTCTGCCTGAAGTTACTGTACGAACCTGTCACAACCCCTTGTGGACATTCTTTTTGTCGCTCATGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCCATCAGTGTGACGTTGAAGAACATCATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGGAAGAGCAGGATGGTTTAATCAACGCTGGTGTTGATTTACTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAAAGGTTTCCGCTCAATATATTTGAACCTCGGTATAGACTAATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTATACTTGATTCTTCGTCAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTAGAAATCACCGAGTGTGAACCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGTAGGAGATTTCGTATCGTCCAATCGTGGGATCAAGATGGGTATCGTGTTGCCGAGGTTGAATGGATGCAGGATATTACGGCACCAGAAGGGAGTACTGAAAGAGAGACTTTACTGGAATTGACATGTAATGCAGCTGAAAGTGCTAGATCATGGATAGCAAGAGCTAAAGAAGCAGCAAGACATGATCAAAGAAAACTTGAGAGACTCACCAGTGTTGAAGTAATGATGCCCTCATTAAAAGACCCTGAACGCTTTAGTTTCTGGCTGGCTACCCTCTCCAATAGGAGGCCTGCGGAAAGATTAGATCTCCTACGCATTAGAGATACCACCGAGAGGATTAGACGGGGCCTGATATTTCTCCGACAAGAAGAACAAGGCTGCAGAATTCAGTAA 1464 0.4276 MASSLSPSPASLDQTLRDVDDYVLENKAEDLSWDTIHYVYELVQNGNAAFRENRMEEAINFYSRANNIKSGDPIILSNRSAAYIRISQYFISRTPSSSECRPLSGLEPTTLAELALKDAEKLVELQSNVAKSYLLKANALLLLEKYEKARDVILSGLQVDPFSNSLRASLQNIERVSSSSTGTSTHGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKEEQDGLINAGVDLLPLFVMDVVIPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMAILDSSSGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIVQSWDQDGYRVAEVEWMQDITAPEGSTERETLLELTCNAAESARSWIARAKEAARHDQRKLERLTSVEVMMPSLKDPERFSFWLATLSNRRPAERLDLLRIRDTTERIRRGLIFLRQEEQGCRIQ* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1911 487 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
Pvu9g1911 487 Gene3D - 414 479 - -
Pvu9g1911 487 ProSiteProfiles Lon N-terminal domain profile. 278 479 IPR003111 -
Pvu9g1911 487 Pfam ATP-dependent protease La (LON) substrate-binding domain 281 478 IPR003111 -
Pvu9g1911 487 SMART ring_2 197 234 IPR001841 -
Pvu9g1911 487 SUPERFAMILY PUA domain-like 281 477 IPR015947 -
Pvu9g1911 487 Gene3D - 279 381 IPR046336 -
Pvu9g1911 487 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Pvu9g1911 487 PANTHER RING FINGER PROTEIN 127 15 479 - -
Pvu9g1911 487 SUPERFAMILY RING/U-box 192 260 - -
Pvu9g1911 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 276 IPR013083 -
Pvu9g1911 487 SMART tpr_5 39 72 IPR019734 GO:0005515
Pvu9g1911 487 SMART tpr_5 130 163 IPR019734 GO:0005515
Pvu9g1911 487 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Pvu9g1911 487 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 15 479 - -
Pvu9g1911 487 Gene3D Tetratricopeptide repeat domain 29 179 IPR011990 GO:0005515
Pvu9g1911 487 SUPERFAMILY TPR-like 38 170 IPR011990 GO:0005515
Pvu9g1911 487 SMART lon_5 280 479 IPR003111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1911 Pvu-Chr9 27290665 27299757 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1911 183 238 C3H Transcription Factor Family AT1G74990 35.593 9.92e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1911 - - gmx:100802277 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1911 9 27290665 27299757 Pvu9g1911 9 27290665 27299757 ECH