Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1908 ATGGGGTGCGTGAGCTCGAAGCAAGCGGTGTCGGTGACGCCGGCGATTGACCACTCGGGCGCGTTTCGGACCAATGCTGCGGGTTTGGGCGAGTCGGAGCGGAAGGAGAAGAAGAGGAGCAAGAAGAGAACCGACTCGGGGGGAGGGAGTCAGAGCGAGGTAGGTGAGTCGGGGAGAACGAGTTCCAATTGCGACTCCCTGAGCTTCAGGTTGGGGAACCTTCACAAGTACGTGCAGGGAGAACACGTGGCCGCCGGCTGGCCGGCGTGGCTCAGCGCAGTCGCCGGCGAGGCCATTCACGGCTGGGTCCCCCTCCGCGCCGATGCCTTCGAAAAACTCGAGAAGATAGGGCAGGGAACGTATAGCAGTGTGTTTCGAGCGAGGGAGCTTGAAACGGGGAAGATAGTGGCATTGAAGAAGGTGCGGTTCGACAATTTTGAACCGGAGAGTGTGCGGTTCATGGCGCGTGAGATATTGATTCTGCGACGCCTTGATCATCCCAATATAATAAAGCTTGAGGGCTTGATTACTTCGAGGCTCTCCTGTAGCATTTACCTCGTCTTTGAGTACATGGAGCATGACATCACAGGGCTCTTGTCTTCCCCTGATATCAAATTCACTGAACCACAGATTAAGTGCTACTTGAAGCAGTTGTTGGCTGGTCTTGAGCACTGTCACCTGCGGGGAGTAATGCATAGGGATATTAAGGGGTCGAATCTTTTGGTGAACAATAAAGGGGTTTTGAAGGTAGCGGATTTTGGGTTGGCGAATTATGTCAATCCTGGGCACAGGCAACCTCTGACTAGTCGTGTTGTTACCTTGTGGTACCGGCCGCCAGAGCTTTTGCTCGGTTCCACGGACTATGGTCCAGCCGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCGGAGCTGCTTGTTGGGAAGCCTATACTTCAGGGGAGAACGGAGGTTGAACAATTGCACAAAATTTTTAAGCTATGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCTCATGCAACGTTATTTAAGCCTCAGCAACCATATGATAGTTGCCTTCGACAATCCTTTAAAGATTTACCAGCGACCAGTGTACATCTGCTACAAACTCTTCTTTCTGTAGAACCATACAAACGTGGGACTGCTACATCTGCTCTCTCATCGGAGTATTTCAAAACAAAACCTTATGCGTGTGACCCATCAAGCTTGCCGATATACCCACCTAGCAAGGAAATCGATGCAAAACACAGGGAAGAGTCAAGGAAAAAGGTTAGTGGACGAGTTCGTGGAACTGAAACAAGAAAACCATCCAGAAAGCCACTGGGATTCAGTAAACTAGCCCCAGCAGAGGATTTGGCAAGTCAAACTCAGACTTCCCAGAAGGTCAATGGTAGATCTTTCCGCAACCATGAAGAAGAGAAGATTAAAATAGGTGACAAAGCACAGAAGTCATCCAGTGGTAAAGCTGAAGATGCTTCCCATATGAAGAATGCTTCTCAAGGAGATATTCCCCTTTCTGGACCATTACAAGTTTCATCATCAAGTGGATTTGCATGGGCAAAAAGCCGAAAAGATGACGCCTCATTTCGATCCCATTGTCGAACTATTTCAAGAGGACATATTTTCAATCCATCAGAACAACCTTCTACATTAAATTCAAGGAATAATTTGGATACCGCAAACCAGGAAAATAAAGAGTTTTGTGGGGGATGCGTCAATTCTAGGGGCCAGCAGCTGCTTGAAATTTCTACGCTTTCAATGCAGAATCAGTGGAGTAAGTTTGATCGCCCAGATTCATTTGATGCTTCGGATGAGTACCATTCACAAGAACTGTCTATGACCCGTTATCACAGAGAAGATTCAGCATCCAAGAGAAATAACCTGAGTTTTCAAGATCAAGGAGAAAGGGTTGAATTTTCTGGGCCCCTGCTATCTCAGATGCACACTGTTGATGAGCTCTTGGAAAGGCATGAACGTCACATCCGGCGAACTGTCCGGAGATCATGGTTTCAGAGAGGTAAGAAGTCGAGGAAGTAA 2046 0.4824 MGCVSSKQAVSVTPAIDHSGAFRTNAAGLGESERKEKKRSKKRTDSGGGSQSEVGESGRTSSNCDSLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFTEPQIKCYLKQLLAGLEHCHLRGVMHRDIKGSNLLVNNKGVLKVADFGLANYVNPGHRQPLTSRVVTLWYRPPELLLGSTDYGPAVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRQSFKDLPATSVHLLQTLLSVEPYKRGTATSALSSEYFKTKPYACDPSSLPIYPPSKEIDAKHREESRKKVSGRVRGTETRKPSRKPLGFSKLAPAEDLASQTQTSQKVNGRSFRNHEEEKIKIGDKAQKSSSGKAEDASHMKNASQGDIPLSGPLQVSSSSGFAWAKSRKDDASFRSHCRTISRGHIFNPSEQPSTLNSRNNLDTANQENKEFCGGCVNSRGQQLLEISTLSMQNQWSKFDRPDSFDASDEYHSQELSMTRYHREDSASKRNNLSFQDQGERVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKSRK* 682
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1908 681 MobiDBLite consensus disorder prediction 1 62 - -
Pvu9g1908 681 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Pvu9g1908 681 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g1908 681 MobiDBLite consensus disorder prediction 413 442 - -
Pvu9g1908 681 MobiDBLite consensus disorder prediction 47 62 - -
Pvu9g1908 681 Gene3D Transferase(Phosphotransferase) domain 1 193 432 - -
Pvu9g1908 681 MobiDBLite consensus disorder prediction 405 513 - -
Pvu9g1908 681 SUPERFAMILY Protein kinase-like (PK-like) 103 401 IPR011009 -
Pvu9g1908 681 PANTHER CELL DIVISION PROTEIN KINASE 1 674 - -
Pvu9g1908 681 MobiDBLite consensus disorder prediction 29 46 - -
Pvu9g1908 681 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g1908 681 MobiDBLite consensus disorder prediction 468 493 - -
Pvu9g1908 681 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 674 - -
Pvu9g1908 681 MobiDBLite consensus disorder prediction 453 467 - -
Pvu9g1908 681 SMART serkin_6 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu9g1908 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Pvu9g1908 681 CDD STKc_CDK9_like 110 394 - -
Pvu9g1908 681 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pvu9g1908 Pvu-Chr9 27230379 27238422 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1908 102 453 Core Cell Cycle Gene Families AT5G10270 48.370 3.93e-114 350
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Pvu9g1908 Pkinase 3.7e-68 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1908 - - var:108332003 1269.6