LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g1908	ATGGGGTGCGTGAGCTCGAAGCAAGCGGTGTCGGTGACGCCGGCGATTGACCACTCGGGCGCGTTTCGGACCAATGCTGCGGGTTTGGGCGAGTCGGAGCGGAAGGAGAAGAAGAGGAGCAAGAAGAGAACCGACTCGGGGGGAGGGAGTCAGAGCGAGGTAGGTGAGTCGGGGAGAACGAGTTCCAATTGCGACTCCCTGAGCTTCAGGTTGGGGAACCTTCACAAGTACGTGCAGGGAGAACACGTGGCCGCCGGCTGGCCGGCGTGGCTCAGCGCAGTCGCCGGCGAGGCCATTCACGGCTGGGTCCCCCTCCGCGCCGATGCCTTCGAAAAACTCGAGAAGATAGGGCAGGGAACGTATAGCAGTGTGTTTCGAGCGAGGGAGCTTGAAACGGGGAAGATAGTGGCATTGAAGAAGGTGCGGTTCGACAATTTTGAACCGGAGAGTGTGCGGTTCATGGCGCGTGAGATATTGATTCTGCGACGCCTTGATCATCCCAATATAATAAAGCTTGAGGGCTTGATTACTTCGAGGCTCTCCTGTAGCATTTACCTCGTCTTTGAGTACATGGAGCATGACATCACAGGGCTCTTGTCTTCCCCTGATATCAAATTCACTGAACCACAGATTAAGTGCTACTTGAAGCAGTTGTTGGCTGGTCTTGAGCACTGTCACCTGCGGGGAGTAATGCATAGGGATATTAAGGGGTCGAATCTTTTGGTGAACAATAAAGGGGTTTTGAAGGTAGCGGATTTTGGGTTGGCGAATTATGTCAATCCTGGGCACAGGCAACCTCTGACTAGTCGTGTTGTTACCTTGTGGTACCGGCCGCCAGAGCTTTTGCTCGGTTCCACGGACTATGGTCCAGCCGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCGGAGCTGCTTGTTGGGAAGCCTATACTTCAGGGGAGAACGGAGGTTGAACAATTGCACAAAATTTTTAAGCTATGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCTCATGCAACGTTATTTAAGCCTCAGCAACCATATGATAGTTGCCTTCGACAATCCTTTAAAGATTTACCAGCGACCAGTGTACATCTGCTACAAACTCTTCTTTCTGTAGAACCATACAAACGTGGGACTGCTACATCTGCTCTCTCATCGGAGTATTTCAAAACAAAACCTTATGCGTGTGACCCATCAAGCTTGCCGATATACCCACCTAGCAAGGAAATCGATGCAAAACACAGGGAAGAGTCAAGGAAAAAGGTTAGTGGACGAGTTCGTGGAACTGAAACAAGAAAACCATCCAGAAAGCCACTGGGATTCAGTAAACTAGCCCCAGCAGAGGATTTGGCAAGTCAAACTCAGACTTCCCAGAAGGTCAATGGTAGATCTTTCCGCAACCATGAAGAAGAGAAGATTAAAATAGGTGACAAAGCACAGAAGTCATCCAGTGGTAAAGCTGAAGATGCTTCCCATATGAAGAATGCTTCTCAAGGAGATATTCCCCTTTCTGGACCATTACAAGTTTCATCATCAAGTGGATTTGCATGGGCAAAAAGCCGAAAAGATGACGCCTCATTTCGATCCCATTGTCGAACTATTTCAAGAGGACATATTTTCAATCCATCAGAACAACCTTCTACATTAAATTCAAGGAATAATTTGGATACCGCAAACCAGGAAAATAAAGAGTTTTGTGGGGGATGCGTCAATTCTAGGGGCCAGCAGCTGCTTGAAATTTCTACGCTTTCAATGCAGAATCAGTGGAGTAAGTTTGATCGCCCAGATTCATTTGATGCTTCGGATGAGTACCATTCACAAGAACTGTCTATGACCCGTTATCACAGAGAAGATTCAGCATCCAAGAGAAATAACCTGAGTTTTCAAGATCAAGGAGAAAGGGTTGAATTTTCTGGGCCCCTGCTATCTCAGATGCACACTGTTGATGAGCTCTTGGAAAGGCATGAACGTCACATCCGGCGAACTGTCCGGAGATCATGGTTTCAGAGAGGTAAGAAGTCGAGGAAGTAA	2046	0.4824	MGCVSSKQAVSVTPAIDHSGAFRTNAAGLGESERKEKKRSKKRTDSGGGSQSEVGESGRTSSNCDSLSFRLGNLHKYVQGEHVAAGWPAWLSAVAGEAIHGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREILILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFTEPQIKCYLKQLLAGLEHCHLRGVMHRDIKGSNLLVNNKGVLKVADFGLANYVNPGHRQPLTSRVVTLWYRPPELLLGSTDYGPAVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRQSFKDLPATSVHLLQTLLSVEPYKRGTATSALSSEYFKTKPYACDPSSLPIYPPSKEIDAKHREESRKKVSGRVRGTETRKPSRKPLGFSKLAPAEDLASQTQTSQKVNGRSFRNHEEEKIKIGDKAQKSSSGKAEDASHMKNASQGDIPLSGPLQVSSSSGFAWAKSRKDDASFRSHCRTISRGHIFNPSEQPSTLNSRNNLDTANQENKEFCGGCVNSRGQQLLEISTLSMQNQWSKFDRPDSFDASDEYHSQELSMTRYHREDSASKRNNLSFQDQGERVEFSGPLLSQMHTVDELLERHERHIRRTVRRSWFQRGKKSRK*	682

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g1908	681	MobiDBLite	consensus disorder prediction	1	62	-	-
	Pvu9g1908	681	Gene3D	Phosphorylase Kinase; domain 1	97	192	-	-
	Pvu9g1908	681	ProSiteProfiles	Protein kinase domain profile.	110	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu9g1908	681	MobiDBLite	consensus disorder prediction	413	442	-	-
	Pvu9g1908	681	MobiDBLite	consensus disorder prediction	47	62	-	-
	Pvu9g1908	681	Gene3D	Transferase(Phosphotransferase) domain 1	193	432	-	-
	Pvu9g1908	681	MobiDBLite	consensus disorder prediction	405	513	-	-
	Pvu9g1908	681	SUPERFAMILY	Protein kinase-like (PK-like)	103	401	IPR011009	-
	Pvu9g1908	681	PANTHER	CELL DIVISION PROTEIN KINASE	1	674	-	-
	Pvu9g1908	681	MobiDBLite	consensus disorder prediction	29	46	-	-
	Pvu9g1908	681	Pfam	Protein kinase domain	110	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu9g1908	681	MobiDBLite	consensus disorder prediction	468	493	-	-
	Pvu9g1908	681	PANTHER	BINDING PROTEIN, PUTATIVE-RELATED	1	674	-	-
	Pvu9g1908	681	MobiDBLite	consensus disorder prediction	453	467	-	-
	Pvu9g1908	681	SMART	serkin_6	110	394	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu9g1908	681	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	230	242	IPR008271	GO:0004672\|GO:0006468
	Pvu9g1908	681	CDD	STKc_CDK9_like	110	394	-	-
	Pvu9g1908	681	ProSitePatterns	Protein kinases ATP-binding region signature.	116	139	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g1908	Pvu-Chr9	27230379	27238422	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g1908	102	453	Core Cell Cycle Gene Families	AT5G10270	48.370	3.93e-114	350

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pvu9g1908		Pkinase	3.7e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g1908	-		-	var:108332003	1269.6