LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g1906	ATGAGCCACAAGCTTGTGTATCTCAATCTCTCCCATAATACTCTCGAGGGGGAGTTAAATCTAAAGGGATTGACTCAGTTGCAAACAGTGGACTTGTCTGTTAATAGGTTCCATGGGGAACTTGGGCTGAGTTTCCCTGCCATTTGTGAGAGTTTGGTGACTTTAAATGTTTCAGATAATCACTTGAGGGGTGAGATTCATGGCTTCTTTGATCAATGCTTGAAGCTGCAGTACTTGGATTTGAGCACCAACCATCTAAATGGGACCTTGTGGACTGGATTTTCCAGGCTGAGAGAGTTTTCTATCTCAGAGAATTTTCTAACTGGGGTTGTTCCTCCCCAGGCTTTTCCAGTAAACTGTAGCATTGAAAATCTGGACCTTTCAGTGAATGGATTTGTTGGTAAGGCCCCCAAGGAGTTATCTAACTGCAAGAATTTAGTGGTTCTCAACCTTTCTAGTAACAATTTCACTGGAGATATTCCCCGTGAAATTGGTTCCATTTCTGGTCTTGAGGGATTGTTCTTGGAGAACAATACTTTCTCAAGGGATATCCCAGAGACCCTTTTGACCTTAACCAATTTGTTCATCTTGGATTTGAGCAGAAACAAATTTGGTGGGGAGGTGCAGGAGATTTTTGGGAAATTCAAGCAACTGAAGTTTCTTGTGCTGCACTCAAATTCTTACACTGGAGGGTTAAACTCATCAAGCATATTTACATTGACAAACCTAAGCCGCTTGGACTTAAGCTTTAATAATTTTTCTGGTCCATTACCTGTTGAAATCTCACAAATGTCTGCACTCGCTTTCTTAACCTTAACCTACAACCAGTTCTCTGGACCTATTCCTTCTGAATTAGGAAAGTTGACTCGCCTTATGGCACTTGATCTTGCCTTCAACAGTTTCAGTGGACCGATCCCACCAAGCCTTGGAAACTTGACTTCTCTCTTATGGCTTACACTTTCAGATAATTCATTAACCGGAGAAATCCCACCAGAGTTGGGAAACTGCTCAAGCATGTTATGGCTAAACCTTGCGAACAACAAACTATATGGAAAAATTCCTTCCGATCTAACAAAAATTGGAAGGAATGCAAGGGCCACATTTGAATCAAATCAAAAGAATCTCGGGGGAGTTGTTGCTGGCAATAGTGAGTGCTTAGCAATGAAGAGATGGATACCTGCTGATTACCCTCCGTTCAGCTTTGTGTATAACATCCTGACAAGGAAGAATTGTAGGGCCCTTTGGGACAGGTTGCTCAAAGGATATGGCATCTTCCCCATGTGTACATCTGAGAACTCTGCTAGATCATCACACATAGCAGGGTATCTTCAGCTAAGTGGGAACTATTTGACTGGTGAGATTCCTTCAGAAATTGAGACCATGGTAAACTTTAGCATGTTTCATTTGGGAGATAACAAGTTCACGGGGAAATTCCCTCCAGGGATGGTAGGTTTACCACTTGTAGTCTTGAACATGACCAGAAACAATTTTTCTGGTGAAATTCCAAGTGATATTGGCAACATGAAGTGTTTACAGGACCTTGATTTGTCTAGGAACAATTTCTCTGGAACATTTCCCATAAGTCTGGCACACTTGGATGAGCTTAGCAGGTTCAACATCTCATACAATCCCCTCATATCTGGTACAGTCCCACCATCTGGACACTTACTCACTTTTGACAAGGATTCATATTTGGGTGACCCCCTCTTGAGCCTCCCAAAGTTCTTTAACATCTCTGATGATAGAAATAACACTTTACACAGAGTCTTGAAAAATCCCACAAAATGGTCTTTGGTTTTGGCTCTAGGACTGGCTATCGTGGTCTTTGGACTTCTTTTCCTTGTGATATGTTTCTTGGTGAAAAGTCCATCTGTGGGACCAGGATACCTCATGAAGAATATAAAGAAGCAAACACATGATTCAGGCAGCTCCGGATCCTCACCATGGTATTCTGACACAGTTAAGATATTCCACCTGAACAAGACAGTTTTCACACATGCAGATATCTTGAAAGCAACCTCCAACTTCACAGAGGAGAGAGTCATAGGAAGGGGTGGCTATGGAACAGTATATAGAGGGTCATTTCCAGATGGGAGAGAGGTGGCGGTGAAGAAGCTCCAAAGGGAAGGAACTGAGGGTGAAAAAGAATTCAGAGCTGAAATGAAGGTTCTAAGTGGTCATGGATTTAGCTGGCCTCATCCAAACCTTGTCACACTGTATGGTTGGTGCCTCTATGGTTCACAGAAGATACTCGTTTATGAGTACATAGGAGGTGGAAGCTTGGAGGAACTTGTGACTGATACAAAAAGATTGAGATGGAGAAGGCGCCTAGAAGTGGCAATTGATGTGGCCAGGGCACTTGTCTATTTACACCATGAGTGCTACCCTTCTATTGTGCATAGAGATGTGAAGGCTAGTAACGTGTTGCTAGACAAGAATGGGAATGCCAAGGTCACAGACTTTGGACTTGCTAGAATTGTTGATGTTGGAGACAGTCATGTGAGCACTATAGTGGCTGGCACAGTGGGCTATGTTGCACCAGAATATGGACAAACATGGAAAGCCACCACAAAAGGGGATGTGTACAGTTTTGGGGTGTTGGTTATGGAGCTAGCAACTGGGAGAAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAATGGACTAGGCGTGTTATGATGGGTTCTGGAAGACAAGGGTTAGCTCAATCTGTACCAGTTTTGTTGAAGGGAAGTGGGGTAGTTGAGGGTGCTAAGGAGATGGGTGACTTGCTCCAAGTTGGAGTGAAATGCACACATGATGCACCACAGGCTAGGCCTAACATGAAGGAGGTTCTTGATATGCTTATTAAGATATATGATCCCACTGGGGACTCAAATTATGGATACCATGTGTAG	2898	0.4327	MSHKLVYLNLSHNTLEGELNLKGLTQLQTVDLSVNRFHGELGLSFPAICESLVTLNVSDNHLRGEIHGFFDQCLKLQYLDLSTNHLNGTLWTGFSRLREFSISENFLTGVVPPQAFPVNCSIENLDLSVNGFVGKAPKELSNCKNLVVLNLSSNNFTGDIPREIGSISGLEGLFLENNTFSRDIPETLLTLTNLFILDLSRNKFGGEVQEIFGKFKQLKFLVLHSNSYTGGLNSSSIFTLTNLSRLDLSFNNFSGPLPVEISQMSALAFLTLTYNQFSGPIPSELGKLTRLMALDLAFNSFSGPIPPSLGNLTSLLWLTLSDNSLTGEIPPELGNCSSMLWLNLANNKLYGKIPSDLTKIGRNARATFESNQKNLGGVVAGNSECLAMKRWIPADYPPFSFVYNILTRKNCRALWDRLLKGYGIFPMCTSENSARSSHIAGYLQLSGNYLTGEIPSEIETMVNFSMFHLGDNKFTGKFPPGMVGLPLVVLNMTRNNFSGEIPSDIGNMKCLQDLDLSRNNFSGTFPISLAHLDELSRFNISYNPLISGTVPPSGHLLTFDKDSYLGDPLLSLPKFFNISDDRNNTLHRVLKNPTKWSLVLALGLAIVVFGLLFLVICFLVKSPSVGPGYLMKNIKKQTHDSGSSGSSPWYSDTVKIFHLNKTVFTHADILKATSNFTEERVIGRGGYGTVYRGSFPDGREVAVKKLQREGTEGEKEFRAEMKVLSGHGFSWPHPNLVTLYGWCLYGSQKILVYEYIGGGSLEELVTDTKRLRWRRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKNGNAKVTDFGLARIVDVGDSHVSTIVAGTVGYVAPEYGQTWKATTKGDVYSFGVLVMELATGRRAVDGGEECLVEWTRRVMMGSGRQGLAQSVPVLLKGSGVVEGAKEMGDLLQVGVKCTHDAPQARPNMKEVLDMLIKIYDPTGDSNYGYHV*	966

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g1906	965	Gene3D	Ribonuclease Inhibitor	427	585	IPR032675	-
	Pvu9g1906	965	Gene3D	Ribonuclease Inhibitor	1	210	IPR032675	-
	Pvu9g1906	965	SUPERFAMILY	Protein kinase-like (PK-like)	654	950	IPR011009	-
	Pvu9g1906	965	ProSiteProfiles	Protein kinase domain profile.	676	965	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu9g1906	965	SUPERFAMILY	L domain-like	188	547	-	-
	Pvu9g1906	965	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED	12	956	-	-
	Pvu9g1906	965	SUPERFAMILY	L domain-like	4	231	-	-
	Pvu9g1906	965	CDD	STKc_IRAK	682	952	-	-
	Pvu9g1906	965	Gene3D	Transferase(Phosphotransferase) domain 1	757	960	-	-
	Pvu9g1906	965	Gene3D	Phosphorylase Kinase; domain 1	643	755	-	-
	Pvu9g1906	965	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	798	810	IPR008271	GO:0004672\|GO:0006468
	Pvu9g1906	965	Gene3D	Ribonuclease Inhibitor	211	384	IPR032675	-
	Pvu9g1906	965	PANTHER	LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN	12	956	-	-
	Pvu9g1906	965	Pfam	Protein kinase domain	676	946	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu9g1906	965	ProSitePatterns	Protein kinases ATP-binding region signature.	682	705	IPR017441	GO:0005524
	Pvu9g1906	965	SMART	LRR_typ_2	191	214	IPR003591	-
	Pvu9g1906	965	SMART	LRR_typ_2	312	336	IPR003591	-
	Pvu9g1906	965	SMART	LRR_typ_2	240	264	IPR003591	-
	Pvu9g1906	965	SMART	serkin_6	676	956	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g1906	Pvu-Chr9	27179214	27183146	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu9g1906	5	952	Receptor kinase-like Gene Family	AT5G07280	32.014	1.54e-133	429

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-Xb-2	Pvu9g1906		Pkinase	1.3e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g1906	-		-	gmx:100781769	1667.13