Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1897 ATGGATCCTCCTCTCATCACCGACTCCACATTCTCCCCCGCTTACACCCTCTCCGATATTTGGCTCCGAACACCCCCTTTTCCCCCCTCCGATCACCACTTCTCCAAGAGTAATTCTGGTAGCAATAAACGGATGAAGGTGGAAGGGTCCAGCGTTGAAAATGATGGTTTCAAAGCTGAAGCAGAAACAAGTTCTGTGAGTGGTAACAAGTCAAGTGAACAAAGCACTATACCTTGTGAGGCACCTAAACAGGAATATATTCACGTGAGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTCTAGCAGAAAGAGCAAGAAGAGAAAAAATCAGTGAGAGAATGAAAATTCTTCAGGATTTGGTTCCAGGGTGTAACAAGGTAAATGGTAAAGCACTAGTCCTAGATGAGATAATCAATTACATACAGTCGCTGCAGCGTCAGGTTGAGTTCCTTTCTATGAAGCTTGAAGCAGTTAATTCAAGGATGAACATGAGCCCTACAATAGATGGGTTGCCTTTAAAAGATGTTGGTGGTACTCCACGATTCGACATTGCTGGAATGGTATTTGGATCACAAGCAGCAAGAGGGTATGCTCAGGGATCACATCATGGATGGCTGCATATGCAGATAGGTGGTGGTTTGAGAGACCAGCATAATTCTGAGAAATCTCATTGGGAATGA 684 0.4474 MDPPLITDSTFSPAYTLSDIWLRTPPFPPSDHHFSKSNSGSNKRMKVEGSSVENDGFKAEAETSSVSGNKSSEQSTIPCEAPKQEYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVNGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMSPTIDGLPLKDVGGTPRFDIAGMVFGSQAARGYAQGSHHGWLHMQIGGGLRDQHNSEKSHWE* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1897 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 93 165 IPR036638 GO:0046983
Pvu9g1897 227 Gene3D - 92 169 IPR036638 GO:0046983
Pvu9g1897 227 CDD bHLH_AtBPE_like 85 164 - -
Pvu9g1897 227 SMART finulus 101 151 IPR011598 GO:0046983
Pvu9g1897 227 Coils Coil 142 162 - -
Pvu9g1897 227 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 36 215 IPR024097 GO:0006355
Pvu9g1897 227 PANTHER BNAC05G07950D PROTEIN 36 215 - -
Pvu9g1897 227 MobiDBLite consensus disorder prediction 31 47 - -
Pvu9g1897 227 MobiDBLite consensus disorder prediction 26 82 - -
Pvu9g1897 227 Pfam Helix-loop-helix DNA-binding domain 99 146 IPR011598 GO:0046983
Pvu9g1897 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 145 IPR011598 GO:0046983
Pvu9g1897 227 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1897 Pvu-Chr9 27052144 27055749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1897 39 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 56.983 1.09e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu9g1897 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1897 - - vra:106758689 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1897 9 27052144 27055749 Pvu9g1897 9 27052144 27055749 ECH