Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1894 ATGATACCTCACATTAAACCTTATTTTAAACATTTCTGTCTCCTCACCACACCTCTTTCTCTCTCTCTTGTATTAATCACTTCCTCACACATTCCCTTCACCAACGCCACAATTCACTTTTCCCTTCCGACCAACGCTAACCGGAAAATGCCTCTCTCCTCCGCTTCCGCCACCCCTCACTCCGCCTCCTCCGCCGAGATCATGCTCTTCGGAGTCAGAGTCGTGGTGGACTCCATGAGGAAGAGCGTCAGCATGAGCAACCTCTCCCAGTACGATCACCCTCGCGATAACGCCAAGGACGACGCCGTCGCCGCTGGCTACGCCTCCGCCGATGATGCTGCTCCCAACAACTCCGGAAAAATCAGGGACCGCAAGCGAGGGATTCCATGGACGGAGGAAGAGCACAAGCTGTTCTTGGTTGGGTTGCAGAAAGTGGGGAAAGGTGACTGGAGAGGAATCTCAAGGAACTATGTCAAGACACGGACTCCAACTCAAGTTGCTAGCCATGCTCAAAAGTACTTTCTCCGCCGTACCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTCGACATCACCACCGATTCGGTCTCTACAACCCCGATGGAGGAAGGACAGATACAGCATCAAGATAACGTGTCTCTTGTGCATCCCATGTACCCTGTTACCCCTGAAGGAAGCAACATGAACGGATTTTCAATGATGCCTATGTATTCTAAGGATATTGGTTCTGGAATTATGTCAGCTCCAGCTGGGAATCCAATGAAAATACTTACTTTGGGACAAGGAAACGTGGAACAGAATGGGCCTAGTACTAAGCTATTTTCTACAGCCCATATTGTTCCAGATCATAGAGGCTCCACAGCGTCTGATATCACTGCCAGTTTAAGTTCAGTTGATCCACCAACACTGTCTCTCGGGTTATCTTTGTCATCTAGTCAAAGACAAACATCATCAATACATTCAGCTTTTCATTCACTGTCGTGTTTCAACAGTGGAGATAGCGTCATAAGCGTTGCTTAG 1023 0.4897 MIPHIKPYFKHFCLLTTPLSLSLVLITSSHIPFTNATIHFSLPTNANRKMPLSSASATPHSASSAEIMLFGVRVVVDSMRKSVSMSNLSQYDHPRDNAKDDAVAAGYASADDAAPNNSGKIRDRKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSTTPMEEGQIQHQDNVSLVHPMYPVTPEGSNMNGFSMMPMYSKDIGSGIMSAPAGNPMKILTLGQGNVEQNGPSTKLFSTAHIVPDHRGSTASDITASLSSVDPPTLSLGLSLSSSQRQTSSIHSAFHSLSCFNSGDSVISVA* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1894 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 178 IPR017930 -
Pvu9g1894 340 ProSiteProfiles SANT domain profile. 130 178 IPR017884 -
Pvu9g1894 340 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 61 340 - -
Pvu9g1894 340 SUPERFAMILY Homeodomain-like 124 178 IPR009057 -
Pvu9g1894 340 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 125 176 IPR006447 GO:0003677
Pvu9g1894 340 Gene3D - 128 180 - -
Pvu9g1894 340 CDD SANT 129 174 IPR001005 -
Pvu9g1894 340 PANTHER KIN2 61 340 - -
Pvu9g1894 340 Pfam Myb-like DNA-binding domain 129 174 IPR001005 -
Pvu9g1894 340 SMART sant 126 176 IPR001005 -
Pvu9g1894 340 ProSiteProfiles Myb-like domain profile. 122 174 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1894 Pvu-Chr9 27033409 27036857 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu9g1894 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1894 - - pvu:PHAVU_009G183300g 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1894 9 27033409 27036857 Pvu9g1894 9 27033409 27036857 ECH
Pvu3g2021 3 40821500 40823556 Pvu9g1894 9 27033409 27036857 PCT