Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1886 ATGTCTTCCTCCTCAACCCACCACACCTATAGCCGCAAGCAGAAATCACTCGGCTTATTGTGCACCAATTTTCTGCGCCTCTACAACAGAGAAGGCGTTCGCTTGATTGGTCTCGATGACGCTGCCTCGCGATTAGGAGTTGAAAGACGCCGGATCTACGACATCGTCAACGTCCTGGAGAGCGTCGGGGTGCTGGCCAGAAAAGCTAAGAATCAGTATACCTGGAAAGGCTTTTCTGCAATTCCCGAGGCTTTGCAAGAACTTAAGGAAGATGGTTTGAAAGAGAACCCTGGGTCTTTTGATGACTCCAATGACAGCGCGAAAGTGTCTGATGATGAGGATGAGGAGGAAACTTCTCCCAATGTCAATACTGAAAGTCAGAATGACAAAGAAATTACTGATTCCGCCGCTCTTGCCCTATCTTCTAAGAATGAAAACAGAAGGGAAAAGTCTCTGGCATTGCTTACTCAGAATTTTGTCAAGCTTTTTATCTGCTCTAGTATTGAAATGATCTCCCTTGACGAAGCTGCAAAGTTGTTGCTTGGAAATGCTAATACATCAATAATGAGGACAAAAGTCAGACGCCTATATGATATTGCAAATGTGTTATCCTCCATGAACCTAATCGAGAAGACCCATACAACAAATACAAGAAAACCAGCATTTAGATGGTTGGGTTGGAGAGGAAAAGCATGGAGTGAATCAGTCGACTTTGCTCACAATTCAAGTGTCAACGAGCTAGGGAAAAGAAAGTTTGGAACTGACATCACAAACGCAAGTTTTAAAAGGAGCAAGACTGATTTGCTCTTGGATGGCCAGACCTGTAAAATGCAAAGTCAACGAGAAAATGTTAGTTACACACAGCCGGAGAAAAGCTACTTAGAAAAAGATGCAAAACAGACTTCAAAGGGCTATCAGTTTGGTCCTTTCGCTCCAGCTTATGTGCCCAAAGTCGGAACCTCTGAAAGTAATAGTGGGAATCAGGTGCATGACTGGGACAGCCTCGCACAGGTTCATCGTCCTCAGTATCAAAACCAAGCTTTGAGAGACTTATTCTCTCACTACATGGATGCATGGAAATCTTGGTACTCTGAAGTTGCTGAGAAAAAGCCAACGAAAACATTATAA 1128 0.4362 MSSSSTHHTYSRKQKSLGLLCTNFLRLYNREGVRLIGLDDAASRLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFSAIPEALQELKEDGLKENPGSFDDSNDSAKVSDDEDEEETSPNVNTESQNDKEITDSAALALSSKNENRREKSLALLTQNFVKLFICSSIEMISLDEAAKLLLGNANTSIMRTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGWRGKAWSESVDFAHNSSVNELGKRKFGTDITNASFKRSKTDLLLDGQTCKMQSQRENVSYTQPEKSYLEKDAKQTSKGYQFGPFAPAYVPKVGTSESNSGNQVHDWDSLAQVHRPQYQNQALRDLFSHYMDAWKSWYSEVAEKKPTKTL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1886 375 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 4 366 - -
Pvu9g1886 375 SUPERFAMILY "Winged helix" DNA-binding domain 149 227 IPR036390 -
Pvu9g1886 375 MobiDBLite consensus disorder prediction 93 131 - -
Pvu9g1886 375 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
Pvu9g1886 375 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Pvu9g1886 375 SMART E2F_TDP_2 147 226 IPR003316 GO:0005667|GO:0006355
Pvu9g1886 375 Gene3D - 141 228 IPR036388 -
Pvu9g1886 375 Gene3D - 7 79 IPR036388 -
Pvu9g1886 375 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Pvu9g1886 375 Pfam E2F/DP family winged-helix DNA-binding domain 149 226 IPR003316 GO:0005667|GO:0006355
Pvu9g1886 375 PANTHER TRANSCRIPTION FACTOR E2F 4 366 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1886 Pvu-Chr9 26885942 26892635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1886 7 371 E2F-DP Transcription Factor Family AT3G48160 58.355 8.58e-131 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pvu9g1886 E2F_TDP 2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1886 K09391 - gmx:100818090 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1886 9 26885942 26892635 Pvu9g1886 9 26885942 26892635 ECH
Pvu3g2030 3 40933175 40936648 Pvu9g1886 9 26885942 26892635 PCT