Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1877 ATGGGTGGCAATGGAAAGCACAGATGGAAAATCTCTTTCCACCGTTCCTCTTCCCAATCCTCAAAGATGGATCCTAAGCTCCCTCCCAAGGAATTTACGTGCCCCATTTCCGGCTCCTTAATGTCCGACCCGGTTGTCGTCGCTTCGGGCCAAACCTTCGAACGCCTCGCCGTTCAAGTCTGCAAGGACCTCAACTTCTCCCCCAAGCAAGAAGACGGGACTCGACCCGATTTCTCAACAGTAATCCCTAACTTAGCCCTCAGAACCACAATCCTCAACTGGTGCGACAAATTAAACACCCAACACCCGCGCCCACCCGATTTCGCCTCCCTCCAGCGCCACGTCACACAAGCAATGGCCGTTTCAGGGGAACAAAACCGACAGGAAGAACAACAACAACGAATTAGGGTTTCGGAAAAGGTGCTTCTCGACGCGGTCGCGGATAACCCCCCCGTCATTTTCTCCCACGCCGCCACTGAGTTAGGTCCCCGTGCCAACCACTTCAACTCGGGATCCTCCGAGGAATCGGTCATCATTCCGCACAGTCCGGGAACGCCGTTGCCGTTTACCATTCGTCCAACCTGCTTCTCCTCCTCCTCCTCCTCGTGCGAGATCGAAATTGAAAACCCTAGCGCGCCGGTTACAGAGGAAGAAGAAGGAGTATTGAAGAAATTGAAGAGCAGCGAGGTGTTTGAGCAAGAAGAAGGCGTAATCGCGCTGAGGAGGATGACGAGGAGCAAAGAGGAGTCTAGGTCCTTGCTCTGCACGCCTCGGGTTCTGCTGGCGCTGCGCGGTTTGATCGCTTCGCGGTACGGCGTTGTTCAGGTAAACGCGGTGGCGTCGCTGGTCAACCTCTCGCTGGAGAAGCAGAACAAGGTGAAGATCGTGAGGTCAGGGTTTGTTCCGTTTTTAATCGATGTTTTGAAGGGGGGTTTGGATGAGTCACAGGAGCACGCTGCGGGCGCGCTTTTCAGTTTAGCCTTGGATGATGATAATAAAATGGCCATTGGCGTTCTGGGCGCGCTGCAACCGCTGATGCACGCGCTGCGTGCTGAGTCCGAGAGGACTCGTCATGACTCGGCGCTCGCGTTGTATCATCTGAGCCTTGTTCAGAGTAACCGGGTGAAGCTGGTGAAACTCGGGGCGGTTCCGACGCTTCTGTCCATGGTGGTGGCGGGGAATTTGGCGAGCCGGGTGCTGCTGATTCTGTGCAATCTGGCGGTGTGCACGGAGGGGCGCACGACAATGCTGGACGCGAACGCGGTAGAGTGTCTGGTGGGGCTATTGAGGGCGAACGAGTTGGACTCGGAGGCGACTCGGGAGAATTGCGTGGCGGCACTGTTCGCACTTAGCCATAGGAGCTTGAGGTTCAAAGGGTTGGCGAAGGACGCGAGGGTTGTGGAGGTTTTGAAGAAGGTTGAACAAACAGGAACGGAGAGGGCCAGGGAGAAGGCTAGGAAGGTATTGCACATGTTGAGAACTTTGGGCGATGGAGATGATGATGAAGGTGACGACTTTTACGACTCGGCCGGGTTGACGCGGAATCGTTACCGACTTGGTGCTGCCAGGAACCACAACATCGTCAACACGACCACGTTTTAG 1602 0.5556 MGGNGKHRWKISFHRSSSQSSKMDPKLPPKEFTCPISGSLMSDPVVVASGQTFERLAVQVCKDLNFSPKQEDGTRPDFSTVIPNLALRTTILNWCDKLNTQHPRPPDFASLQRHVTQAMAVSGEQNRQEEQQQRIRVSEKVLLDAVADNPPVIFSHAATELGPRANHFNSGSSEESVIIPHSPGTPLPFTIRPTCFSSSSSSCEIEIENPSAPVTEEEEGVLKKLKSSEVFEQEEGVIALRRMTRSKEESRSLLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPFLIDVLKGGLDESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRAESERTRHDSALALYHLSLVQSNRVKLVKLGAVPTLLSMVVAGNLASRVLLILCNLAVCTEGRTTMLDANAVECLVGLLRANELDSEATRENCVAALFALSHRSLRFKGLAKDARVVEVLKKVEQTGTERAREKARKVLHMLRTLGDGDDDEGDDFYDSAGLTRNRYRLGAARNHNIVNTTTF* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1877 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 105 IPR013083 -
Pvu9g1877 533 ProSiteProfiles U-box domain profile. 27 101 IPR003613 GO:0004842|GO:0016567
Pvu9g1877 533 Pfam U-box domain 29 96 IPR003613 GO:0004842|GO:0016567
Pvu9g1877 533 Gene3D - 214 512 IPR011989 -
Pvu9g1877 533 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 523 - -
Pvu9g1877 533 MobiDBLite consensus disorder prediction 1 28 - -
Pvu9g1877 533 CDD RING-Ubox 34 81 - -
Pvu9g1877 533 SUPERFAMILY RING/U-box 14 104 - -
Pvu9g1877 533 PANTHER U BOX DOMAIN-CONTAINING 1 523 - -
Pvu9g1877 533 Pfam Armadillo/beta-catenin-like repeat 329 368 IPR000225 GO:0005515
Pvu9g1877 533 SMART arm_5 409 452 IPR000225 GO:0005515
Pvu9g1877 533 SMART arm_5 288 328 IPR000225 GO:0005515
Pvu9g1877 533 SMART arm_5 329 369 IPR000225 GO:0005515
Pvu9g1877 533 SUPERFAMILY ARM repeat 221 492 IPR016024 -
Pvu9g1877 533 SMART Ubox_2 31 94 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1877 Pvu-Chr9 26743223 26748586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1877 1 533 U-box Gene Family AT5G65200 55.575 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1877 - - gmx:100784564 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0232 4 2083576 2085264 Pvu9g1877 9 26743223 26748586 ECH
Pvu9g1877 9 26743223 26748586 Pvu9g1877 9 26743223 26748586 ECH