Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu9g1873 | ATGGCATCATTTGCAGGGACTACCCAGAAGTGCAAAGCATGTGAGAAGACAGTGTATTTGGTGGATCAGCTCACTGCTGACAACAAGATCTATCACAAATCCTGTTTCAGATGCTACCACTGCAAGGGTACCCTCAAGTTAAGTAACTATTGTTCCTTTGAGGGTGTTTTATACTGTAAGCCACATTTTGATCAACTCTTTAAGAAGACTGGCAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAACTGCTAGACTTGAAAGATCTGCTGATCAGGTCCACACCAATAGCAAGGTTTCAAATTTATTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTAGCTGTTGATGGAACATCTTACCATAAGGCTTGTTTCAGGTGCACTCATGGAGGATGTGTAATTAGCCCCTCAAATTATGTTGCCCATGAACACCGCCTTTATTGTAGGCACCATCACACTCAGTTGTTCAAGCAGAAAGGTAACTTCAGCCAACTTGATAAGCAAGAAAATGACGAAGGGGTGACTGAGAACACAACAACTGAGTGA | 576 | 0.4184 | MASFAGTTQKCKACEKTVYLVDQLTADNKIYHKSCFRCYHCKGTLKLSNYCSFEGVLYCKPHFDQLFKKTGSLDKSFEGIPRTARLERSADQVHTNSKVSNLFAGTQEKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKQENDEGVTENTTTE* | 192 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu9g1873 | 191 | MobiDBLite | consensus disorder prediction | 171 | 191 | - | - | |
Pvu9g1873 | 191 | CDD | LIM1_SF3 | 7 | 69 | - | - | |
Pvu9g1873 | 191 | ProSiteProfiles | LIM domain profile. | 9 | 69 | IPR001781 | - | |
Pvu9g1873 | 191 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 36 | - | - | |
Pvu9g1873 | 191 | Gene3D | Cysteine Rich Protein | 104 | 174 | - | - | |
Pvu9g1873 | 191 | Gene3D | Cysteine Rich Protein | 5 | 75 | - | - | |
Pvu9g1873 | 191 | SMART | lim_4 | 10 | 62 | IPR001781 | - | |
Pvu9g1873 | 191 | SMART | lim_4 | 109 | 161 | IPR001781 | - | |
Pvu9g1873 | 191 | PANTHER | OS06G0237300 PROTEIN | 1 | 185 | IPR045268 | GO:0051015 | |
Pvu9g1873 | 191 | ProSiteProfiles | LIM domain profile. | 108 | 168 | IPR001781 | - | |
Pvu9g1873 | 191 | ProSitePatterns | LIM zinc-binding domain signature. | 11 | 45 | IPR001781 | - | |
Pvu9g1873 | 191 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 37 | 77 | - | - | |
Pvu9g1873 | 191 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 185 | - | - | |
Pvu9g1873 | 191 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 174 | - | - | |
Pvu9g1873 | 191 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 102 | 135 | - | - | |
Pvu9g1873 | 191 | CDD | LIM2_SF3 | 110 | 170 | - | - | |
Pvu9g1873 | 191 | Pfam | LIM domain | 11 | 65 | IPR001781 | - | |
Pvu9g1873 | 191 | Pfam | LIM domain | 110 | 165 | IPR001781 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu9g1873 | Pvu-Chr9 | 26696676 | 26700497 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LIM | Pvu9g1873 | LIM | 2.4e-10 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu9g1873 | K09377 | - | gmx:100500501 | 402.519 |