Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1855 ATGGAGATTGTGATTTCTTTGATAATATTGTTTGTGGGGATAGCGATTTTGGTGGTTATCCATGTCTGCATCGTGGGGAGAGCCTTCAGAGGGGATACTAATGAAGGTAATCAACAGGGGCAGAACATGAATAGAATGAAAAGAATGTTGGGTGGAGACAACATTGGTGACCTCAAAAACCTTCCTTGCTTTGTGTACGAGGAGGCAGCAGCATCAGCAGAGAGAAGAGGGTGCAGCCTCGTGGATTGTGTTGTTTGCTTGGACAGTTTCAAGGTTGGTGATGTGTGCAGGTTGTTGCCCAATTGCAACCACACCTTCCATGTGCACTGTATAGACTCCTGGATTCTCCACACACCCATTTGTCCCATTTGTAGAACATTGGTTCTTTCAGTAAGAGAACAACAAACTCATGTTTCTGAGAATGTACAAATTGTAACAACATAG 444 0.4369 MEIVISLIILFVGIAILVVIHVCIVGRAFRGDTNEGNQQGQNMNRMKRMLGGDNIGDLKNLPCFVYEEAAASAERRGCSLVDCVVCLDSFKVGDVCRLLPNCNHTFHVHCIDSWILHTPICPICRTLVLSVREQQTHVSENVQIVTT* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1855 147 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 144 - -
Pvu9g1855 147 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 144 - -
Pvu9g1855 147 SMART ring_2 83 124 IPR001841 -
Pvu9g1855 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 129 IPR013083 -
Pvu9g1855 147 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Pvu9g1855 147 Pfam Ring finger domain 82 125 IPR001841 -
Pvu9g1855 147 SUPERFAMILY RING/U-box 60 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1855 Pvu-Chr9 26404339 26405281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1855 58 128 C3H Transcription Factor Family AT2G18670 43.662 1.14e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1855 - - vra:106760242 239.58