Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1854 ATGAAGAGGAGATTAGCAAGCGCCAGCGATGATTCCACTAAACTTGATCGCAAAACCATCGAAAGAAACCGCAGAATCCACATGAAATCCCTCTGCCATCAGCTTGGTTCTCTTATTCCTCCCAACCTCAAACCACCCAAATCCAAGCTGATGCTAGGGCAGCAGGACCAGCTGGATCTTGCAGCACGGTATATCAAACACATGAGAGAGAGAATAGAGAAATTGAAGAGGCAGAAGGAGAAAGCCATGTCAAACCAAAGCAGCGATAGAAAAATGTTGGATAAAAACGTTGACACCAAGTTGCCGGTACTGGAGCTCAGAGACTTGGGTTCCGGCATCGAAGTGATGCTGGTGAGTGGGTTGAACAAGACATTCATGTTGTACGAAGTAATCAATGTTCTTGAGGAAGAAGGTGCTGAAGTTGTCACAGCAAGCTTCTCAACTGTCGGTGACAAGATATTTTACGTTGTTCACGCTCAGGTTAAAATATCAAGGGTTGGAGTGGAGACCACAAGGGTAAGGGATAGACTTCAAGAATTTATTGCCCCATTAGAAATGTGGCCGGAAGACATGTGA 576 0.4531 MKRRLASASDDSTKLDRKTIERNRRIHMKSLCHQLGSLIPPNLKPPKSKLMLGQQDQLDLAARYIKHMRERIEKLKRQKEKAMSNQSSDRKMLDKNVDTKLPVLELRDLGSGIEVMLVSGLNKTFMLYEVINVLEEEGAEVVTASFSTVGDKIFYVVHAQVKISRVGVETTRVRDRLQEFIAPLEMWPEDM* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1854 191 SMART finulus 18 74 IPR011598 GO:0046983
Pvu9g1854 191 PANTHER TRANSCRIPTION FACTOR BHLH162 10 182 - -
Pvu9g1854 191 Coils Coil 58 85 - -
Pvu9g1854 191 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 182 IPR015660 GO:0003700|GO:0006357
Pvu9g1854 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 86 IPR036638 GO:0046983
Pvu9g1854 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 68 IPR011598 GO:0046983
Pvu9g1854 191 Gene3D - 5 98 IPR036638 GO:0046983
Pvu9g1854 191 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1854 Pvu-Chr9 26388869 26390326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1854 7 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.294 1.21e-25 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu9g1854 HLH 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1854 - - gmx:100790403 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2060 3 41256378 41257472 Pvu9g1854 9 26388869 26390326 ECH
Pvu9g1854 9 26388869 26390326 Pvu9g1854 9 26388869 26390326 ECH
Pvu3g2060 3 41256378 41257472 Pvu9g1854 9 26388869 26390326 PCT