Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1852 GCTATTGTGGTAATTAATTGGAAGTTATACCAATCTTGTACATGCCCTTTGCATATATGGACTGTGGTTGATTACACTGTTGTTTTCACTTTCCGACTTTTGATGTTCATTGATAATGGACTTGCTTCAGGAATGGGTTTAGATTTTGGATGGCCACAGAGATGTGCTTATTTTTATGGAAGAGTGATTGTACTTTCAATCCTTGCATTCCTTTTCTATCCATTTCTTTGGGCTTGGACAATAATTGGTACCTTATGGTTTAGCAACACTAAAACTTGTTTGTCTAGAGGGGGTCAAAAATGGAGCTTCCTTATTTGGTTAGTTTTTAGCTATTGTGGACTTCTTTGTATTGCTTGTGTGGCACTAGGGAAGTGGTTGAAACGAAGACAAATACATGTGTTAAATGCTACAGAGAGTATCCATATATCTGCATTTGGGAAAGACGCAATTGAATCTTCAATTCAAGAACTTGCAACATTTACGATAAATGTGGTTCCTACTAATTGCAATGAATGCCTCATCTGCTTAGAAGAGTTTTGTGTAGGAAATCAGGTTCGTGGCTTGCCCTGTTCTCACAATTTCCATGTTGAATGTATAGATGTGTGGCTTCGGCTTAATGTGAGTTGTCCTCGATGTCGTTGCTCAGTATTTCCTAATCTTGATCTTAATGCTCTATCAGATATCCCTTACGATGATGTGGAACTATTGGGTAAAGCTAGAATGAGGGCTATAAAATATTCTTGTCGGAAAGGAGCACAACTTTCACAAGGTGGAAAAAATGGTATTCCTATGAAGTCAAGTTTATACCTCCAAGAATTAATCGTTGAGTTATTAATGAAGTTCGAGGAGAGGTCACCTGTAGAAGATTTCTCGATGCTCAAATCAGTAAGAGCTACACAAATTATAAAATATACGAGTATAAAAGTGAATAAGAGAATTGAATGA 945 0.3693 AIVVINWKLYQSCTCPLHIWTVVDYTVVFTFRLLMFIDNGLASGMGLDFGWPQRCAYFYGRVIVLSILAFLFYPFLWAWTIIGTLWFSNTKTCLSRGGQKWSFLIWLVFSYCGLLCIACVALGKWLKRRQIHVLNATESIHISAFGKDAIESSIQELATFTINVVPTNCNECLICLEEFCVGNQVRGLPCSHNFHVECIDVWLRLNVSCPRCRCSVFPNLDLNALSDIPYDDVELLGKARMRAIKYSCRKGAQLSQGGKNGIPMKSSLYLQELIVELLMKFEERSPVEDFSMLKSVRATQIIKYTSIKVNKRIE* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1852 314 SMART ring_2 172 212 IPR001841 -
Pvu9g1852 314 CDD RING-H2_EL5_like 171 213 - -
Pvu9g1852 314 Pfam Ring finger domain 170 213 IPR001841 -
Pvu9g1852 314 ProSiteProfiles Zinc finger RING-type profile. 172 213 IPR001841 -
Pvu9g1852 314 SUPERFAMILY RING/U-box 171 221 - -
Pvu9g1852 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 2 146 IPR044793 GO:0004842|GO:0010182
Pvu9g1852 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 147 234 IPR044793 GO:0004842|GO:0010182
Pvu9g1852 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 218 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1852 Pvu-Chr9 26344869 26351297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1852 35 234 C3H Transcription Factor Family AT3G47990 56.250 1.25e-88 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1852 K16284 - gmx:100808817 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1852 9 26344869 26351297 Pvu9g1852 9 26344869 26351297 ECH
Pvu3g2062 3 41287193 41294054 Pvu9g1852 9 26344869 26351297 PCT