Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1828 ATGGATATTGATACATTGGTGAAAGAAAGCTTTGTCCCACAGCCCTTGCAAGAAAGTTGTACGAAAGATATGATTCCTTTGGGAAATCCTTCATCTCATCAACTCTTGCAAGAGCATTTTCACCATATTGATGAGTTTCAATTCAGTGTGCCCTCATCGATTAATTCAACATTTCATGCTTTTCACAATTTCACCTTTACACCTTCATCACCTAATTTAGATGTATATGAGTGCAAGCCTTTTGTTATGGACAATTTCCTTTATGGAAATTCTCAAAGAAATATTGAACTAGATATCATGGTTTCAAATCAAAGCTTTTTGCCTTTTACTCCTCAACAAATCAAACACTCCAATTTTGCTTTACCAGATGAACTTTCATGCATATCCTCAATGAATTATTACAAAGGAATTGGCGTTAACAAAAACCATAGATCCTATCCAACCACTCGAAGAACATACAAAGTTCACAAGAAGTCCAACACAGTCAAGGGGCATTGGACAATAGAAGAAGATGGAATATTGATTCAACTGGTGGAACAATACGGATTAAGGAAGTGGTCTCATATTGCTAAGATATTGCCTGAAAGAATTGGAAAACAGTGCAGAGAGAGATGGCATAACCATTTAAGGCCTGATATCAAGAAGGACACATGGAATTGTGAAGAGGATAAAATACTAATCGAAGCTCATGCTAAGATTGGAAACAAATGGGCAGAGATTGCTAAAAGGTTGCCTGGAAGAACTGAGAACTCGATCAAAAACCACTGGAATGCAACCAAGAGAAGGCAATATTCCAAAAGAAAGTGTCGATCCAAGTACCCTAGAGGCACCCTTCTCCAAGAGTATATCAAGAGTTTGAACTTAGACAAGAACCCCCCAAGAGATTATAGGAGAAAATCTTGTGTTAATTATGCTACTCCCATGAATATCAAAACCAGCACAAGCAAAGCCACTGCACCAGCTTTGCCCCAGACAGTTTTTCAATTTTGTGCCACTGAATGCTTGGCACCAAATTCTGATTTCAATGTGGTTCCAGATTTTCTCTTTGGTGAGAATTTGTTTGAAGAAGGATGCTGTATCGATTCTCTTCTAGATGGTGTGCCTTGTGTTCCTCTCGAGAATAACAAAATTTTTGAAGGAAAAATGCAATTTGATGGAATGATGGAGGGAATAAAACATTGTGATTATGGAGGAATAGAGTGTGTTGCAGGTGTTAATATGGATGAGAATGATGTTGAGAGAGATATGGCACTAGAGATGTTGAAGGTTGAAGTTAAGAATGAGCTGGATTTGGTTGAGATGATCTCTCAGATTAATAATGAAACTTTTTATGTGTAA 1338 0.3744 MDIDTLVKESFVPQPLQESCTKDMIPLGNPSSHQLLQEHFHHIDEFQFSVPSSINSTFHAFHNFTFTPSSPNLDVYECKPFVMDNFLYGNSQRNIELDIMVSNQSFLPFTPQQIKHSNFALPDELSCISSMNYYKGIGVNKNHRSYPTTRRTYKVHKKSNTVKGHWTIEEDGILIQLVEQYGLRKWSHIAKILPERIGKQCRERWHNHLRPDIKKDTWNCEEDKILIEAHAKIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGTLLQEYIKSLNLDKNPPRDYRRKSCVNYATPMNIKTSTSKATAPALPQTVFQFCATECLAPNSDFNVVPDFLFGENLFEEGCCIDSLLDGVPCVPLENNKIFEGKMQFDGMMEGIKHCDYGGIECVAGVNMDENDVERDMALEMLKVEVKNELDLVEMISQINNETFYV* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1828 445 ProSiteProfiles Myb-like domain profile. 210 260 IPR001005 -
Pvu9g1828 445 CDD SANT 166 209 IPR001005 -
Pvu9g1828 445 SMART sant 162 211 IPR001005 -
Pvu9g1828 445 SMART sant 214 262 IPR001005 -
Pvu9g1828 445 SUPERFAMILY Homeodomain-like 161 256 IPR009057 -
Pvu9g1828 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 264 IPR017930 -
Pvu9g1828 445 PANTHER MYB PROTEIN-RELATED 107 288 - -
Pvu9g1828 445 Pfam Myb-like DNA-binding domain 166 222 - -
Pvu9g1828 445 PANTHER BNAC03G62830D PROTEIN 107 288 - -
Pvu9g1828 445 Gene3D - 162 214 - -
Pvu9g1828 445 ProSiteProfiles Myb-like domain profile. 158 209 IPR001005 -
Pvu9g1828 445 CDD SANT 217 260 IPR001005 -
Pvu9g1828 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 158 213 IPR017930 -
Pvu9g1828 445 Gene3D - 216 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1828 Pvu-Chr9 25880015 25881654 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1828 112 368 MYB Transcription Factor Family AT4G18770 55.185 4.69e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu9g1828 Myb_DNA-bind_6 7.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1828 K09422 - gmx:102662267 622.468