Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1824 ATGGGTGATGTTGGTGGATCATCTGGGAAAGATAGTACGAAGAGAATTGAAAGCAAGAAGACAAATGAGGTTCAAGAACTGAAGGATAATCTTCTAAGTAGATATAGTGGTTACATTACTAATCTGAAGCATGAATTTTCCAGAAAGAAGAAGAAAGAAAAGCTACCAAAAGAAGCAAAGAAAATCTTACTTGCATGGTGGAATATTCACTTTAAATGGCCATACCCAACGGATGCTGATAAGGTTGCCCTAGCTGAATGGACTGGTTTGGACCAGAAGCAAGTAAATAACTGGTTTATAAACCAAAGGAAACGACATTGGAAACCATCAGAAGAAATGCAGGTTGCAATTTTGGATGGACTCTACGAACCACTTCACGAGTGA 384 0.3854 MGDVGGSSGKDSTKRIESKKTNEVQELKDNLLSRYSGYITNLKHEFSRKKKKEKLPKEAKKILLAWWNIHFKWPYPTDADKVALAEWTGLDQKQVNNWFINQRKRHWKPSEEMQVAILDGLYEPLHE* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1824 127 ProSiteProfiles 'Homeobox' domain profile. 46 109 IPR001356 GO:0003677
Pvu9g1824 127 CDD homeodomain 62 110 IPR001356 GO:0003677
Pvu9g1824 127 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Pvu9g1824 127 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 8 126 - -
Pvu9g1824 127 Gene3D - 43 116 - -
Pvu9g1824 127 SMART HOX_1 48 113 IPR001356 GO:0003677
Pvu9g1824 127 Pfam Homeobox KN domain 66 105 IPR008422 GO:0003677|GO:0006355
Pvu9g1824 127 SUPERFAMILY Homeodomain-like 48 117 IPR009057 -
Pvu9g1824 127 ProSiteProfiles ELK domain profile. 26 46 IPR005539 GO:0003677
Pvu9g1824 127 MobiDBLite consensus disorder prediction 1 22 - -
Pvu9g1824 127 Pfam ELK domain 26 47 IPR005539 GO:0003677
Pvu9g1824 127 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 126 - -
Pvu9g1824 127 SMART ELK_2 26 47 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1824 Pvu-Chr9 25798799 25800188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1824 23 126 Homeobox Transcription Factor Family AT4G08150 67.308 1.74e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pvu9g1824 Homeobox_KN 5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1824 - - pvu:PHAVU_009G176700g 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1824 9 25798799 25800188 Pvu9g1824 9 25798799 25800188 ECH