Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1809 ATGGCATCATCCAGCTCCTACAATTCTCCTTGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCCTTTCAGGGTGCATCTTTGCACCTTACTTCCCACCAGAAGAGCCTCAGAAGTTCGCGAACGTGCACAAGATATTCGGTGCTAGCAATGTGACGAAGCTTCTGAACGAGCTTCTCCCTCACCAGAGGGAAGATGCAGTGAACTCCCTTGCCTATGAAGCTGAGGCACGTGTGAGAGACCCCGTTTATGGCTGCGTAGGAGCCATCTCTTTCCTGCAGAGACAAGTCCAAAGGCTCCAAAAGGAGCTTGATTCTGCCAATGCTGATCTCCTTCGCTATGCCTACAATGACATACCTCCACCCTCTCTTTCTGTACCACCAGCAATGACAGCAACAACAATTCAACAAATGCCCCAAAGGTCTTTCTGTGCAAGGTTTGGAAATGAAGGAAGTGGGTTTTATAGGCCCTCTCCTACCACCACTTACAACTCTTTCCCTTATTCTCTTCCATGGACTGATACCCCTCCTGAGAACAATGATGGACGAGGAGAAGGAGGAGGTAACTTGTGA 570 0.4895 MASSSSYNSPCAACKFLRRKCLSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYAYNDIPPPSLSVPPAMTATTIQQMPQRSFCARFGNEGSGFYRPSPTTTYNSFPYSLPWTDTPPENNDGRGEGGGNL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1809 189 PANTHER ELONGATED PETIOLULE 1 1 187 - -
Pvu9g1809 189 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Pvu9g1809 189 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Pvu9g1809 189 Coils Coil 89 116 - -
Pvu9g1809 189 MobiDBLite consensus disorder prediction 166 189 - -
Pvu9g1809 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1809 Pvu-Chr9 25537328 25539743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1809 1 189 AS2 family AT5G63090 62.121 1.69e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu9g1809 LOB 9.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1809 - - gmx:100799774 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2102 3 41772866 41775107 Pvu9g1809 9 25537328 25539743 ECH
Pvu9g1809 9 25537328 25539743 Pvu9g1809 9 25537328 25539743 ECH
Pvu3g2102 3 41772866 41775107 Pvu9g1809 9 25537328 25539743 PCT