Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1806 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGGAAAGGTTTATGGTCCCCCGAAGAAGATGAGAAGCTATTCAATTACATAACCAGATTTGGTGTTGGCTGCTGGAGTTCTGTTCCCAAACAAGCTGGACTGCAAAGGTGTGGAAAGAGTTGCAGATTGAGGTGGATAAACTACTTGAGGCCTGATTTAAAGAGAGGGATGTTCTCTCAACAAGAGGAGGATCTTATAATTAGCCTTCATGAAGTTCTAGGAAATAGGTGGGCTCAAATTGCAGCTCAATTACCAGGGAGAACAGATAATGAGATTAAGAACTTTTGGAATTCATGTTTGAAGAAGAAGCTAATGAAACAAGGGATTGACCCTGCTACGCACAAGCCTCTCCTCAGTGCTGAAGATCACATAATAAAGGAAGAGAAGGACACCATAGAGACACCGTCTATGATATTACCAGTGTCTCATGGGATTTTAGTCTCCTCATCACAGGATTCACCACTTCTAGTGAACAATTCAAATTACTATGATGGTGTGTTCAATGTAACAGAAACTTCAAGGGAAGTTTTCATGAGCAAGAATGCATTGGACCCTTTGTCCTACTTTGAATTCCAAATGGGTTACAATTCAAGTGTGAACCCAATTAGACTGTTTGATCAGAACCAAGTGGGAACTAATTCAAGTTATGGATTCTCCTCATTGCCGTGTCTGAACAGTTCTGATCACCACGGGAACGTGTCGGTGGCAGAGTTTTCAGACAACAACTCAGCTTCTAAAATCAGTTCTTTGTTGAAGGAAAGTTCCAGCAATAGCTCAAGCATGAGTGTTTATCCAGGGGCCGGGTCTCAAACGATGGAAAATGCGGGATTCTCATCATGGGAAATTGAGAACAAAATTGATCCTTTGCTACAGTTTCAAGTCAATGTGGTAAAATCTGAGGAGTTCAAGACAAGTTCGTGGCAAGAAGGGCAGTTTCTGACTCAGAATTCCATAGATTTCACTACCTATCCGTTAATGGCACTGTCGGAGGATCTAACGGGAGCAAATTTTGATGTGTTCCAGCATATGTGA 1068 0.4167 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLLSAEDHIIKEEKDTIETPSMILPVSHGILVSSSQDSPLLVNNSNYYDGVFNVTETSREVFMSKNALDPLSYFEFQMGYNSSVNPIRLFDQNQVGTNSSYGFSSLPCLNSSDHHGNVSVAEFSDNNSASKISSLLKESSSNSSSMSVYPGAGSQTMENAGFSSWEIENKIDPLLQFQVNVVKSEEFKTSSWQEGQFLTQNSIDFTTYPLMALSEDLTGANFDVFQHM* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1806 355 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu9g1806 355 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pvu9g1806 355 Gene3D - 69 142 - -
Pvu9g1806 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu9g1806 355 CDD SANT 70 109 IPR001005 -
Pvu9g1806 355 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu9g1806 355 PANTHER MYB TRANSCRIPTION FACTOR 1 351 - -
Pvu9g1806 355 CDD SANT 17 61 IPR001005 -
Pvu9g1806 355 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu9g1806 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu9g1806 355 SMART sant 13 63 IPR001005 -
Pvu9g1806 355 SMART sant 66 114 IPR001005 -
Pvu9g1806 355 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pvu9g1806 355 Gene3D - 11 67 - -
Pvu9g1806 355 PANTHER MYB DOMAIN PROTEIN 55 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1806 Pvu-Chr9 25423507 25425216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1806 1 208 MYB Transcription Factor Family AT4G01680 60.577 6.89e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu9g1806 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1806 K09422 - gmx:100799243 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2105 3 41843469 41845136 Pvu9g1806 9 25423507 25425216 PCT