Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1804 ATGACGACGCGGTTCAAGAAGAACAGGAAGAAGAGGGGTCACGTGAGCGCCGGTCACGGGCGCATAGGGAAGCACCGGAAGCATCCCGGAGGGCGAGGTAACGCCGGAGGCATGCACCACCACCGTATCCTCTTCGACAAGTACCATCCAGGCTACTTCGGGAAGGTCGGAATGCGGTACTTCCACAAGCTCCGCAACAAGTTCCATTGCCCCATCCTTAATATCGACAAGCTCTGGTCCCTCGTCCCCCAGGAAATCAAGGACAAAGCCTCCAAGGACAACATGGCGCCTCTCATCGACGTCACGCAGTTCGGTTACTTCAAGCTTTTGGGGAAGGGCGTTCTGCCGGAGAACCAACCCCTCGTCGTCAAGGCCAAGCTCGTCTCCAAGATCGCCGAGAAGAAGATCAAGGAGGCTGGAGGCGCTGTTGTACTCACCGCTTGA 444 0.5743 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPILNIDKLWSLVPQEIKDKASKDNMAPLIDVTQFGYFKLLGKGVLPENQPLVVKAKLVSKIAEKKIKEAGGAVVLTA* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1804 147 MobiDBLite consensus disorder prediction 1 35 - -
Pvu9g1804 147 ProSitePatterns Ribosomal protein L15 signature. 108 140 IPR001196 GO:0003735|GO:0005840|GO:0006412
Pvu9g1804 147 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 144 IPR021131 -
Pvu9g1804 147 PANTHER 60S RIBOSOMAL PROTEIN L27A-3 1 147 - -
Pvu9g1804 147 SUPERFAMILY Ribosomal proteins L15p and L18e 6 146 IPR036227 -
Pvu9g1804 147 Gene3D - 58 147 - -
Pvu9g1804 147 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 147 - -
Pvu9g1804 147 Hamap 50S ribosomal protein L15 [rplO]. 1 146 IPR030878 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1804 Pvu-Chr9 25373898 25374981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1804 1 147 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 87.075 1.32e-92 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1804 K02900 - csv:101221117 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2107 3 41874737 41875699 Pvu9g1804 9 25373898 25374981 ECH
Pvu9g1804 9 25373898 25374981 Pvu9g1804 9 25373898 25374981 ECH
Pvu3g2107 3 41874737 41875699 Pvu9g1804 9 25373898 25374981 PCT