Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1794 ATGAGTGCTCCCATGGACACCGAGCTCACAACCTACGAAAATGGCGCTGTTCCCCAACACTCACTTCCCGAGGACAAAGTTCTTGTTCCTGTCGAGGTAACCCTAAAACCTTCCAGCACCGCTAAAATCGAAGATGTTCGTTCCGCTGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATAACGATGGACCCATTCCGGTGCCTCTTGATGAGGCGTTTCTCTTAGATAACGTTGAAAGAATTTGCGTTTGCGGATGTGATACTGATGATGGGAGGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCTATTGTACATGTTTTTCAGCTTAGCGAGGAAGGTCCATGTGAGGATATAAGCTCTGATGGGCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAACGGTTATTACGTTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAAAGGGTTGATCCATTCCTTGTTTCATGGAATCGCATAATTCTGTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCTCAGAAATTAGCAATTCGATTCAATTCAAGATACCCTCAGTCCCAGCTTATTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTAGCGAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTTGTATTTGTATTGATTGATGAAGTCGAAAGTCTTGCTGCTGCTAGAAAAGCTGCCCTATCTGGTTCTGAACCTTCTGATTCTATTCGGGTTGTCAATGCATTACTAACTCAGATGGACAAGTTAAAATCATCTCCTAATGTGATAATTCTAACCACTTCCAACATAACTGCAGCTATTGACATTGCTTTTGTCGATCGAGCTGATATCAAAGCATATGTTGGTCCCCCTACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTGCAGGAACTGATACGTACAGGGATCTTGACTAGTTTACAGGATTGCAAGAATGTCATGCTTCCAAATTACGCTTGTGCAAAGGAGAGGTTGAACGCTCCAGATTTTCATGAGGGTGCTACATTCATGCAACTGTGCAAGCACTTATTGGAAACCGCGGAGGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTTTTAGCACATGCTGCACTTTCAAATCCTTTTGATTGTAACCCTGTTAAGTTCTTATGTACAATGGTAGAAACAGCAAAGAGGGAGCGTTCTGAGCTTCCTGACCAAAATAACTAA 1350 0.42 MSAPMDTELTTYENGAVPQHSLPEDKVLVPVEVTLKPSSTAKIEDVRSAVEGMLEKRSLSYNDGPIPVPLDEAFLLDNVERICVCGCDTDDGRHNDNVLLFWQVKPIVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKRVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLAIRFNSRYPQSQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTSLQDCKNVMLPNYACAKERLNAPDFHEGATFMQLCKHLLETAEACEGMSGRSLRKLPFLAHAALSNPFDCNPVKFLCTMVETAKRERSELPDQNN* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1794 449 Gene3D - 123 347 IPR027417 -
Pvu9g1794 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 411 IPR027417 -
Pvu9g1794 449 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 22 443 IPR044539 -
Pvu9g1794 449 SMART AAA_5 180 332 IPR003593 -
Pvu9g1794 449 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 184 202 IPR001270 GO:0005524
Pvu9g1794 449 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 298 312 IPR001270 GO:0005524
Pvu9g1794 449 ProSitePatterns AAA-protein family signature. 302 321 IPR003960 GO:0005524|GO:0016887
Pvu9g1794 449 Pfam ATPase family associated with various cellular activities (AAA) 184 329 IPR003959 GO:0005524|GO:0016887
Pvu9g1794 449 CDD AAA 182 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1794 Pvu-Chr9 25275614 25281900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1794 184 398 Calmodulin-binding Proteins AT3G56690 28.182 7.87e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1794 K22399 - gmx:100795009 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1794 9 25275614 25281900 Pvu9g1794 9 25275614 25281900 ECH