Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1781 ATGGGTTACGAAGACAATCCGTATCGCGACGAGGACGGTGAGCCCTTGATGGACTACGACGACGTTCAATCCGACCGCGAGCCCTCCCCGGAGCCGCGTCACCAGCTCGACGATTACGAGGACGATGTCAACGACGAGTGGCGCGGCCGGGATCGGTCGCAGACGCCGGTGTACGACAACGATGCAGCGCGATCGAAGCCGCGGAAGAGGCTGATCAAGAAGAGCGTCGCTGGGAAGCAGTCGGTGGCGGCGGAGCTCGAGGATGAGGAGGAGGAGGGGTATGTTCCAGAGGCGAGGTTTGACGAGGAAGATGGAAGAAAGAGGAAGAAGGGAAAGGAAGTTGGGAGTGGGAAGAAGGAGAAAAGGCTGAAGGGGGAACAGAGGTTCGGTAGTGGCGATGGATCCAAATTTGGGGGTTCGAAAAAAGGTTTTGGTGGTAAGGCTGGGAAGGATCATGATGGTGAAGTTAAGGAGATGTGGGATACAATTGCTGGGGGAGATTCTGAGGATGATCACGATGGTGTCAGGGATCTGGATGATGACAACTTTATAGATGACACTGGAGTGGAACCTGCTTATTATGGTAGTGATGAACCACGTTCTCCTGGTGATGCTCCTCAGGCAGAAGAAGGTGAAGAGGATTCAGAAATGAAGGATCTTTTTAAAATAGGGAAGAAAAGGAAGAAGAACGAGAGAAGTCCTGCTGAAATAGCATTACTAGTGGAGAATGTCATGGCTGAGCTTGAGGTTACAGCTGAAGAGGATGCTGATCTTAATAGACAGGGGAAACCTGCTATTAATAAACTCAAGAAACTGACTCTTCTCACAGAAGTCCTCTCGAAAAAACAACTTCAATTAGAGTTTTTAGATCATGGAGTTCTAACATTATTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGTTTGCCTAATATAAATATACGCATGGAAATATTGAGGATTTTGAATGAGTTTCCTATAGACCTAGAGCAGTACGATAGGAGAGAACAACTGAAAAAGAGTGGCCTTGGAAAGGTGATTATGTTTTTATCAAAATCTGACGAAGAAATCAGTGTAAATAGAAAACTAGCCAAGGAGTTGGTTGACAAGTGGAGCCGGCCTATATTTAATAAGAGTACCCGATTTGAAGACATGAGAAATGTAGAAGATGATAGGGTTACTTATAGGAGACCATCTGTTAAAAAGCCAACTAATAAAGTTGCAGGAATATCGAGAGATAGTGATCTTGATTTGGAAATTTCACAGCCTACTACGGCTGGACAATCTTCTTCTAGGCAGCATGCTTCGAGGCCGGAAGCAACACCTTTAGATTTTGTTATACGACCCCAATCTAAAATTGATCCCGACGAGATTAGAGCCCGGGCAAAGCAAGCTGCCCAAGATCAACAGCGTATGAAGATGAATAAGAAATTGCAGCAATTGAGGGCACCAAAAAAGAGGCAGCTCCAGGCTACAAAACTGAGTGTGGAAGGTCGTGGTATGGTCAAATATTTGTAA 1518 0.4605 MGYEDNPYRDEDGEPLMDYDDVQSDREPSPEPRHQLDDYEDDVNDEWRGRDRSQTPVYDNDAARSKPRKRLIKKSVAGKQSVAAELEDEEEEGYVPEARFDEEDGRKRKKGKEVGSGKKEKRLKGEQRFGSGDGSKFGGSKKGFGGKAGKDHDGEVKEMWDTIAGGDSEDDHDGVRDLDDDNFIDDTGVEPAYYGSDEPRSPGDAPQAEEGEEDSEMKDLFKIGKKRKKNERSPAEIALLVENVMAELEVTAEEDADLNRQGKPAINKLKKLTLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRMEILRILNEFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEISVNRKLAKELVDKWSRPIFNKSTRFEDMRNVEDDRVTYRRPSVKKPTNKVAGISRDSDLDLEISQPTTAGQSSSRQHASRPEATPLDFVIRPQSKIDPDEIRARAKQAAQDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMVKYL* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1781 505 MobiDBLite consensus disorder prediction 99 129 - -
Pvu9g1781 505 MobiDBLite consensus disorder prediction 417 437 - -
Pvu9g1781 505 ProSiteProfiles TFIIS N-terminal domain profile. 295 378 IPR017923 -
Pvu9g1781 505 MobiDBLite consensus disorder prediction 463 490 - -
Pvu9g1781 505 PANTHER PROTEIN IWS1 HOMOLOG 1 1 505 IPR044204 GO:0009742|GO:0032784
Pvu9g1781 505 MobiDBLite consensus disorder prediction 145 182 - -
Pvu9g1781 505 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 290 378 IPR035441 -
Pvu9g1781 505 MobiDBLite consensus disorder prediction 1 216 - -
Pvu9g1781 505 MobiDBLite consensus disorder prediction 394 448 - -
Pvu9g1781 505 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 234 381 IPR035441 -
Pvu9g1781 505 PANTHER PROTEIN IWS1 HOMOLOG 1 1 505 - -
Pvu9g1781 505 Pfam TFIIS helical bundle-like domain 322 375 IPR017923 -
Pvu9g1781 505 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1781 Pvu-Chr9 25136997 25140379 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pvu9g1781 Med26 2.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1781 K17498 - gmx:100801805 818.92