Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1780 ATGAAGGATGTTTTTAAAATAGGGAAGAAAAGGAAGAAGAACGAGAGGAGTCCTGCTGAAATAGCATTACTAGTGGCGAATGTCATGGCTGGGCTTGAGGTTACAGCCCAAGAGGATGCTGATCTTAATAGACAGGGGAAACCTGCCATTAATAAACTCAAGCAGTTACCTCTTCTCACACAAGTCCTTTCCAAGAAACAACTTCAGTTAGAGTTTTTAGATCATGGAATTCTAACATTGTTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGTTTGCCTAATATAAATATACGCATGGAAATCTTGAGGATTTTGAATGAGTTTCCTATAGACCTAGAGCAGTGCGATAGGAGAGAACAACTGAAGAAGAGTGGCCTTGGAAGGGTGATTATGTTTTTATCAAAATCCGACGAAGAAACCAGGCTAAACAGAAAACTAGCCAAGGAGTTGGTTGACAAGTGGAGTCGACCTATATTCAATAACAGTATCCTATTTGAAGACATAAGAAAGAAAAAGAAGTGTAGAAGATGA 534 0.3933 MKDVFKIGKKRKKNERSPAEIALLVANVMAGLEVTAQEDADLNRQGKPAINKLKQLPLLTQVLSKKQLQLEFLDHGILTLLKNWLEPLPDGSLPNINIRMEILRILNEFPIDLEQCDRREQLKKSGLGRVIMFLSKSDEETRLNRKLAKELVDKWSRPIFNNSILFEDIRKKKKCRR* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1780 177 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 18 164 IPR035441 -
Pvu9g1780 177 ProSiteProfiles TFIIS N-terminal domain profile. 79 162 IPR017923 -
Pvu9g1780 177 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 76 159 IPR035441 -
Pvu9g1780 177 Pfam TFIIS helical bundle-like domain 106 159 IPR017923 -
Pvu9g1780 177 PANTHER PROTEIN IWS1 HOMOLOG 1 2 173 IPR044204 GO:0009742|GO:0032784
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1780 Pvu-Chr9 25122763 25124078 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pvu9g1780 Med26 6.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1780 K17498 - pop:7491883 288.115