Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1771 ATGTCTATCACTGCCACTGCCTTCAAGTCCCTCACCATGGCCGATTCCTGCCTCCTCTCTTCTCCCTCCTCTCTCTTCCACAACATAACCAAATCCCACGTCTTCTCACCTCCCTCCAAACCCCTCACACTCCAATTCTCATGCCTCAACTCCTCACCCTCGCTCTCTCTTTCCCTCGCTGCACGAACCCACCGTTCCCCCGTCCTCACCCACGTCGCCCAAACTTCCGATTGGGCCCAGCAAGAAGGCAACGCCGACACCGTCCAGGCCCAAGATGAAAAACAAGAAGAGCCTGGTCTCCTCGACTGGGAGCCCAACGGCGAAGAAGATGAGGGTTTCGTCGAACCGCCAGAAGAGGCCAAAATCTTCGTCGGCAACTTGCCTTACGACGTTGATAGTGAGAAACTGGCCATGCTATTCGACAAAGCCGGAGTCGTTGAAATCGCCGAGGTGATTTATAACAGGGAAACTGACCGGAGTCGCGGATTTGGGTTTGTGACGATGAGTACTGTTGAAGAAGCTGAGAAGGCTGTGGAGAAATTCAGTGGCTATGATTATGATGGAAGACAGTTGACTGTTAATAAGGCTTCTCCGAGAGGAGCTCAACCTGAACGCCCACCTCGTCGTAACTTTGAGCCTGCCGCTTCTATTTATGTTGGTAATTTGCCATGGGATATTGATAGCACAAGGTTGGAGCAAGTTTTCAGTGAGCATGGTAAGGTTGTGAGTGCTAGGGTAGTCTATGACAGGGACAGTGGTCGTTCTCGTGGCTTTGGCTTTGTCACAATGTCGACTGAAACAGAAATGAATGATGCTGTTGCTGCTCTTGATGGTCAGACTTTGGACGGAAGAACAATTAGGGTGAATGTTGCTGAGGACAGACCCCCCAGGCGTAGCTCCTTCTGA 906 0.5143 MSITATAFKSLTMADSCLLSSPSSLFHNITKSHVFSPPSKPLTLQFSCLNSSPSLSLSLAARTHRSPVLTHVAQTSDWAQQEGNADTVQAQDEKQEEPGLLDWEPNGEEDEGFVEPPEEAKIFVGNLPYDVDSEKLAMLFDKAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEKFSGYDYDGRQLTVNKASPRGAQPERPPRRNFEPAASIYVGNLPWDIDSTRLEQVFSEHGKVVSARVVYDRDSGRSRGFGFVTMSTETEMNDAVAALDGQTLDGRTIRVNVAEDRPPRRSSF* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1771 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Pvu9g1771 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 287 IPR000504 GO:0003723
Pvu9g1771 301 SMART rrm1_1 216 289 IPR000504 GO:0003723
Pvu9g1771 301 SMART rrm1_1 121 194 IPR000504 GO:0003723
Pvu9g1771 301 MobiDBLite consensus disorder prediction 77 113 - -
Pvu9g1771 301 Gene3D - 69 205 IPR012677 -
Pvu9g1771 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Pvu9g1771 301 Gene3D - 206 300 IPR012677 -
Pvu9g1771 301 CDD RRM_HP0827_like 121 198 - -
Pvu9g1771 301 PANTHER OS02G0815200 PROTEIN 2 92 - -
Pvu9g1771 301 PANTHER OS02G0815200 PROTEIN 99 299 - -
Pvu9g1771 301 SUPERFAMILY RNA-binding domain, RBD 205 299 IPR035979 GO:0003676
Pvu9g1771 301 PANTHER RIBONUCLEOPROTEIN 2 92 - -
Pvu9g1771 301 PANTHER RIBONUCLEOPROTEIN 99 299 - -
Pvu9g1771 301 SUPERFAMILY RNA-binding domain, RBD 116 209 IPR035979 GO:0003676
Pvu9g1771 301 CDD RRM_HP0827_like 217 292 - -
Pvu9g1771 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1771 Pvu-Chr9 25016188 25018700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1771 120 298 Eukaryotic Initiation Factors Gene Family AT3G16380 30.726 1.08e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1771 - - gmx:100810381 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2133 3 42106366 42108946 Pvu9g1771 9 25016188 25018700 ECH
Pvu9g1771 9 25016188 25018700 Pvu9g1771 9 25016188 25018700 ECH
Pvu3g2133 3 42106366 42108946 Pvu9g1771 9 25016188 25018700 PCT