Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1761 ATGACAACCACTCCAGTCCCTTTGCTTTTCTTCCTCTTCTCCCTCCTCACTCCTACCCTCATTTTCTCTTCACCACTTCATAACGCTGAAGAGGTCGTGCAAGAGGTCAACAGGAAAATCAACGCCTCCATGGCTAGACATAGGAGGAACTTGGGCTACCTCTCATGCGGCAGTGGCAACCCCATTGACGACTGTTGGCGGTGCGACCCGAATTGGGAGCAGAACCGGCAAAGGCTAGCGGACTGCGCAATCGGGTTCGGAAAGAACGCCATCGGCGGAAGGGACGGGAAGATCTACGTGGTGGACGACGCCGGTGACGACGACCCGGTGAACCCGAAGCCAGGGACGCTCCGCCACGCCGTGATCCAAGACGAGCCCCTCTGGATCATCTTCGCGCGCGACATGGTGATCCAGCTGAAGGAGGAGCTTCTAATGAACTCCTTCAAGACCATCGACGGCCGCGGCGCCAGCGTGCACATCGCCGGCGGCCCCTGCATCACCGTCCAGTACGTGACGAACGTGATCATCCACGGCATCCACCTGCACGACTGCAAGCAGGGAGGGAACGCTATGGTGCGGTCCTCCCCACGGCACTACGGGTGGAGAACCGTGTCGGACGGCGACGGCGTGTCCATCTTCGGAGGAAGCCACGTGTGGGTGGACCACTGCTCCTTGTCGAACTGCAACGATGGGTTGATCGACGCCATCCATGGGTCCACTGCCATCACCATCTCCAACAATTACATGACGCATCATGACAAGGTCATGCTCTTAGGTCACAGTGACTCCTACACTCAGGACAAGGACATGCAGGTCACTATTGCTTTCAACCACTTCGGTGAAGGCCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGGTATTTCCATGTGGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGGGGAAGTGCTAATCCAACCATCAATAGCCAAGGCAACAGATTTGTTGCACCAGATGACAGATTCAGCAAAGAGGTGACAAAACGAGAAGAGGCAGCAGAGAGTGAATGGCAGGGCTGGAATTGGAGATCAGAAGGGGACTTGTTAGTAAATGGTGCATTTTTCACTGCTTCCGGAGCTGGAGCCTCCTCTAGCTATGCAAGGGCTTCTAGCCTAAGTGCAAGACCATCTTCACTTGTTGCTTCCATTACAACAGGTGCTGGTGCACTATCCTGCAAGAAAGCTTCTCCTTGCTCATCATGA 1233 0.5458 MTTTPVPLLFFLFSLLTPTLIFSSPLHNAEEVVQEVNRKINASMARHRRNLGYLSCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAIGGRDGKIYVVDDAGDDDPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHIAGGPCITVQYVTNVIIHGIHLHDCKQGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKREEAAESEWQGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVASITTGAGALSCKKASPCSS* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1761 410 PANTHER PECTATE LYASE 18-RELATED 7 405 IPR045032 GO:0030570
Pvu9g1761 410 SUPERFAMILY Pectin lyase-like 49 402 IPR011050 -
Pvu9g1761 410 Gene3D - 59 401 IPR012334 -
Pvu9g1761 410 SMART amb_all 134 331 IPR002022 -
Pvu9g1761 410 PANTHER PECTATE LYASE 7 405 - -
Pvu9g1761 410 Coils Coil 26 46 - -
Pvu9g1761 410 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Pvu9g1761 410 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Pvu9g1761 410 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Pvu9g1761 410 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Pvu9g1761 410 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Pvu9g1761 410 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Pvu9g1761 410 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Pvu9g1761 410 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Pvu9g1761 410 Pfam Pectate lyase 145 325 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1761 Pvu-Chr9 24925196 24927951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1761 9 408 Polysaccharide Lyase AT5G63180 79.104 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1761 K01728 - gmx:100814679 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1761 9 24925196 24927951 Pvu9g1761 9 24925196 24927951 ECH
Pvu3g2140 3 42186228 42188285 Pvu9g1761 9 24925196 24927951 ECH
Pvu1g2652 1 51315890 51318232 Pvu9g1761 9 24925196 24927951 ECH
Pvu9g1761 9 24925196 24927951 Pvu3g2140 3 42186228 42188285 ECH
Pvu3g2140 3 42186228 42188285 Pvu9g1761 9 24925196 24927951 PCT