Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1753 ATGAGAGCCACAGAGAAGAAATCAGGGATAATGGGAGGGGGTTCGGAGGGTAACGCAGACGTTTTGCCGTGGCTGAAATCGATGCCGGTGGCGCCGGTGTACCGGCCGACTGCGGAGGAGTTCCAAGATCCAATCGGCTACATATTCAAGATCGAGAAGGAAGCGTCCAAGTACGGCATCTGCAAAATCATCCCTCCCTTCCCTCCTTCCCCGAAGAAAACCGCCATCGCCAATCTCAACCGCTCACTTGCCGTTTCAGGTTCCACATTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCCGCCCCCGTCCCGTGCAGCGTCCTGTATGGCAGAGCGGCGATCACTACACCTTCACAGAGTTCGAGTCCAAAGCCAAGTCCTTCGAGAAAGCGTACCTCAAACGCCACACCAGAAAGGGCTCGGGCTCGGGCCCAGGCCCGGGTCCGACCCCGCTTGAGACCGAGACGCTCTTCTGGAAGGCCACCTTGGACAAACCCTTCTCCGTGGAATACGCGAACGACATGCCGGGTTCTGCGTTCTCCCCCAAATGCCGCCATGCTGGGGATCCCACCTCCCTCGCGGACACTCCGTGGAACATGCGAGCGGTTTCGCGGGCCACGGGTTCGCTCTTGCGCTTCATGAAGGAGGAGATTCCGGGCGTTACTTCTCCCATGGTCTACGTCGCCATGCTCTTCAGCTGGTTCGCGTGGCACGTTGAGGACCACGACTTGCACAGCTTGAACTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGAGTCCCCCGTGATGCTGCCGTCGCGTTTGAGGAGGTTGTTAGGGTTCACGGCTACGGTGGAGAGATTAATCCGCTGGTTACATTTGCTATTCTTGGTGAGAAAACCACGGTGATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGGTTCAGTCATGGTTTTAATTGTGGAGAGGCAGCAAACATTGCGACGCCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCCATTCGGAGGGCTTCATTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCGAGCGTCAGTGCTGGACCTCGTAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAAGATGTGTTACAGAACAATGATCTGCTTCATATACTGGGGAAAGGATCTGCTGTAGTACTTCTTCCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAGCAATCCATCAATGTAAGCAATTCTGAGGGAATGCATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAGTCATGGAATCAAGCAAGAAAAAAGTTTCTATTCTGTGAAAGACAAGTTTACTACGATGTATGAAAGGAACAGGATTTCCTCTTTTGATGTAAATGGTAACTCAAGCACTTCAAGTTCTAAGCCACTTCAAAGGGACACTGAGGGAGAAACTAGTGAAGAAGATGGATTGTCAGATCAGAGACTGTTTTCATGTGTCACTTGTGGAATATTAAGCTTTTCTTGTGTTGCTATTGTACAGCCTAGAGATCCCGCTGCTAGATATCTCATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAACAGTAAATTTACTACTGCCCCAGAAGAAGCAACTATTCCTGTGTCAAATATGTATACAGGATGGATGAAAAAAAATGTCCAAGATGGTATGCAAGATGTTTCTGTTCAATCTTCTCGAGATGCTTTAAATATTGAAAGTGAAAAGGGCAATTCAGCTCTTGCACTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCAGATTTCAGCTGATGGTCATGAAACAAATGTGCTAAACTCTGCTTCTGAAAGTTTACTTTCTCATACTCAAGATTCCCATGCTAGTCCCATGCCTGCACTTGATAGTGCAGATAATATTCCTTCAAAGAGTGCCAGTTGTGAGGATTTAATGCATCATAGATTTGAGTGTAATTTGAGTCATCAATCTTTAGACCACTCTTTAAAGAAACAGGAGTATAATATCACATCGGGGGTAACATTTGAAAATATGAGGACGGTGCCTAATTCCACCTCCAATTGTTCCCAAGACGCCCATGATGCTGAAAGGTCATTGTCTAAAATGTCTATGGTTCCCTTTGATAATAAAAATTCTTCCATGGTGTTACAGTCTGATGAAGATTCATCCAGAATGCATGTGTTCTGTCTGGAGCATGCTGCAGAAGCTGAGAAGCAACTTCGCCCCATAGGTGGAGCCCACATATTTCTCCTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAAGTGGTGGCAGAAGATTTGGGGATTGATTACACATGGAAGAGTATTGCATACAGGCATGCTTCCAAGGATGATGGGGAGAGGATCCAGTCGGCTCTAGATAGCGAGGAAGCCATTCCTGGGAATGGTGACTGGGCTGTAAAACTAGGGATCAATCTCTTTTATAGCGCATATCTTAGTCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTGTGCATTTGGTTGTAGCTCTCCATCTAGCTTACCCGAAGAGCCAAAGGTCTACCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAACCAGGTCCATCCCCTTTTAGCGAAAAGAGATTCTGAGGATGCCGAGGATGAGAAAATGTTACTTGGTTGGATATTACCTGATGCGAGAATTGAGAGATCAGAAAGTACCCCCAAAAGTGAAACTACTAGCAGAAAGTCAGGTAAGAAAAGGAAAATGACAGCAGAGAATGGACGAACCAGGAAAGGAAGTTATGCTAAGAAAAATGTAGTTTCATATAATTCAACTGAAGATAAACCCAACTCACAGCCAAGGAGGATTCATAGAAGTAAGAAAGCCAGGAATGTTGAGAGAGATCGTGCGGCTTTGAAAGGGGATAGTTCTCCCTATCATCATCGAAAACCTATAAGCAAACAAACAAACTGTACTGAAAGTGATGCGGTTTCTGATGATTCAGTTGATGATGAAGATGATCACATGCAGCATGGGAGGAATTTTGACATTGACAATGATGTGGTTTCAAATGATACAGGGGACTGTGATTCTGATTGGCAGCAGAGGGAAGAACATAGCAGTAAGGACGTTGAAGATATGGAGAGAGATGCAATTTCAGAGGATTCTTTAGATGTTGGTTCTCTTCAGCTGCAAAGGAAGACTTCTGAAGGCAAGCATGCCAAATGCACTAGTGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTTGTTTTCAGAAGCGGCAGAGGAGAACTCCTAAAAGCAGGCAAGCCAAGTATCTGAGTGGAAAAAATATAACATCTGACGACCAGCTAGAGCTGAAAATGCAGAAGGAGCAACGGAGGAATCCTAAAAACAGGCAAGACAAATACCTCAATGAAGAGGATATTGATTCAGATGACCAACTGGAGGGCCATTATCGTAGGTATCAAAGAAGGAATCCTAAAGGCAGGCAGGCCAAATGTGTAGCAGAGGAAGATGAAATGTCAGGTGACCAATTGGAGGATCATTGTCAGAAGCTGCAAACAAGTTTCTCTAGGAAAAAGCAAATCAAAGGCATCGATAGAGAAGTTAAATATGTAATGTCTGATGATCAATTGGAGGATCATTTTCCAAAGCAGCAGAGAAGAACTCCTAAGAGCAGGCAAAACAAATACACTGATAAAGAAGTTATGGATGACTCGGCTGAAAATAATTCTCGCGTGCTGCATAGAACTCCTAAAAGAAAGCAAGATAAATCCATGGACGAAGATGATTTGAATTCTGATGATGAAATGGAAGATGATCAGCAGCTGAGAAGAACTCTTAGAAGTAAACAATCTAAACCAAAAACACTTCAACAGATGAAGCAAGCCAATTCCCTGCAAGCAAAAAGCCAGGCTTCTCGGTCCATAAAGAGGGGGTCTCGGGTGCTTGTGAAATCAAAGATTCCTCAGCAAATAAAGCCAAGGAATAAGCAATCCAGTAACTCCCGAGAGTTTAGTTTACTGATGGAAGACGAGGAAGAAGGTGGACCAAGTACCCGCCTTAGGAAGAGAACCACAAAAGCTCAGGAGAGTGAAGGAAAATTGAAAGACAAGCAAACAAAAAGGAAGAAGGTGAAGAATGCTACAACTGCAAAGGTTTCAGTTGGTCATGCCAAAGGGAAGGATGGGGATGCAGATTATCAATGTGATATTGATGGGTGCAGTATGAGCTTTGGATCAAAACAGGAGCTGCTGCATCACAAGAGAAATATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAACACCGGCGAGTTCATGAGGATGAGCGACCCTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAGCACATTCGAGTCCACACTGGTGCACGGCCTTATGTATGTGCAGAGCAAGGTTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCGGCGAAGAAGAGTCGTCAATAG 4791 0.4511 MRATEKKSGIMGGGSEGNADVLPWLKSMPVAPVYRPTAEEFQDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLAVSGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDHYTFTEFESKAKSFEKAYLKRHTRKGSGSGPGPGPTPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRHAGDPTSLADTPWNMRAVSRATGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPASVSAGPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHILGKGSAVVLLPRSSVDISVCSKLRVGSQQSINVSNSEGMHSSKGFVSDDLVFNRSHGIKQEKSFYSVKDKFTTMYERNRISSFDVNGNSSTSSSKPLQRDTEGETSEEDGLSDQRLFSCVTCGILSFSCVAIVQPRDPAARYLMSADCSFFNDWVVGSGVSNSKFTTAPEEATIPVSNMYTGWMKKNVQDGMQDVSVQSSRDALNIESEKGNSALALLASAYGNSSDSEEDQISADGHETNVLNSASESLLSHTQDSHASPMPALDSADNIPSKSASCEDLMHHRFECNLSHQSLDHSLKKQEYNITSGVTFENMRTVPNSTSNCSQDAHDAERSLSKMSMVPFDNKNSSMVLQSDEDSSRMHVFCLEHAAEAEKQLRPIGGAHIFLLCHPDYPKIEAEAKVVAEDLGIDYTWKSIAYRHASKDDGERIQSALDSEEAIPGNGDWAVKLGINLFYSAYLSRSPLYSKQMPYNSVIYCAFGCSSPSSLPEEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDAEDEKMLLGWILPDARIERSESTPKSETTSRKSGKKRKMTAENGRTRKGSYAKKNVVSYNSTEDKPNSQPRRIHRSKKARNVERDRAALKGDSSPYHHRKPISKQTNCTESDAVSDDSVDDEDDHMQHGRNFDIDNDVVSNDTGDCDSDWQQREEHSSKDVEDMERDAISEDSLDVGSLQLQRKTSEGKHAKCTSEEDIISDDQMESCFQKRQRRTPKSRQAKYLSGKNITSDDQLELKMQKEQRRNPKNRQDKYLNEEDIDSDDQLEGHYRRYQRRNPKGRQAKCVAEEDEMSGDQLEDHCQKLQTSFSRKKQIKGIDREVKYVMSDDQLEDHFPKQQRRTPKSRQNKYTDKEVMDDSAENNSRVLHRTPKRKQDKSMDEDDLNSDDEMEDDQQLRRTLRSKQSKPKTLQQMKQANSLQAKSQASRSIKRGSRVLVKSKIPQQIKPRNKQSSNSREFSLLMEDEEEGGPSTRLRKRTTKAQESEGKLKDKQTKRKKVKNATTAKVSVGHAKGKDGDADYQCDIDGCSMSFGSKQELLHHKRNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEQGCGQTFRFVSDFSRHKRKTGHSAKKSRQ* 1597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1753 1596 Pfam jmjN domain 32 65 IPR003349 -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 1040 1065 - -
Pvu9g1753 1596 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1299 1586 - -
Pvu9g1753 1596 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1192 - -
Pvu9g1753 1596 ProSiteProfiles Zinc finger C2H2 type domain profile. 1533 1562 IPR013087 -
Pvu9g1753 1596 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Pvu9g1753 1596 SMART JmjN_1 30 71 IPR003349 -
Pvu9g1753 1596 ProSiteProfiles Zinc finger C2H2 type domain profile. 1563 1594 IPR013087 -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 979 1259 - -
Pvu9g1753 1596 ProSitePatterns Zinc finger C2H2 type domain signature. 1535 1557 IPR013087 -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 1145 1173 - -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 513 529 - -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 680 701 - -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 513 539 - -
Pvu9g1753 1596 SUPERFAMILY Clavaminate synthase-like 191 381 - -
Pvu9g1753 1596 ProSitePatterns Zinc finger C2H2 type domain signature. 1505 1527 IPR013087 -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 1286 1465 - -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 1419 1451 - -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 1107 1132 - -
Pvu9g1753 1596 ProSiteProfiles Zinc finger C2H2 type domain profile. 1503 1532 IPR013087 -
Pvu9g1753 1596 SUPERFAMILY beta-beta-alpha zinc fingers 1543 1587 IPR036236 -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 979 1009 - -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 1286 1341 - -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 1404 1418 - -
Pvu9g1753 1596 Gene3D Classic Zinc Finger 1501 1531 - -
Pvu9g1753 1596 Gene3D Classic Zinc Finger 1532 1559 - -
Pvu9g1753 1596 Coils Coil 1441 1461 - -
Pvu9g1753 1596 SUPERFAMILY beta-beta-alpha zinc fingers 1503 1539 IPR036236 -
Pvu9g1753 1596 SMART cupin_9 194 363 IPR003347 -
Pvu9g1753 1596 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 17 1192 - -
Pvu9g1753 1596 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1299 1586 - -
Pvu9g1753 1596 ProSiteProfiles JmjC domain profile. 194 363 IPR003347 -
Pvu9g1753 1596 ProSitePatterns Zinc finger C2H2 type domain signature. 1565 1589 IPR013087 -
Pvu9g1753 1596 Gene3D Classic Zinc Finger 1560 1589 - -
Pvu9g1753 1596 Gene3D Cupin 24 367 - -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 1195 1218 - -
Pvu9g1753 1596 SMART c2h2final6 1503 1527 IPR013087 -
Pvu9g1753 1596 SMART c2h2final6 1563 1589 IPR013087 -
Pvu9g1753 1596 SMART c2h2final6 1533 1557 IPR013087 -
Pvu9g1753 1596 SMART c2h2final6 1480 1502 IPR013087 -
Pvu9g1753 1596 MobiDBLite consensus disorder prediction 1365 1390 - -
Pvu9g1753 1596 Pfam JmjC domain, hydroxylase 227 345 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1753 Pvu-Chr9 24785330 24795168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1753 791 885 C2H2 Transcription Factor Family AT5G04240 34.737 4.92e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu9g1753 JmjC 1.2e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1753 - - gmx:100775271 2660.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1753 9 24785330 24795168 Pvu9g1753 9 24785330 24795168 ECH
Pvu9g1753 9 24785330 24795168 Pvu3g2143 3 42230290 42237544 PCT