Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1752 ATGGAGCCCTCTGAATCCGAATCAGTTACTTCCCCCACCAAGGACTCGCAATTGGGTGAACCTTCCACCCCTGTTCACCCACTCGATCATGATCCTCAACCCTCAGATCTCAATCACGTTGCCCAAGATGATGCTGCACTTGGTGGGGAGCTTGAGGACAAGTTGGATTTGAAGGATGAGGGTGAGAGTGAGGATAAAGGTTCGAACTTGGAAGATGGGGGTGGAAATTTGAGTGATGAAGGTGCTGCCCCTGAAGGTGGTAAGGGAGAAGGGAGTAAGGTTGATGGTGGTGGTGATGTTGTTGTTGTTGATGATGATGATGATGATTGCAATGGGGGTGACGAGGGGTGTGATTGGATTGAGAATGTGAATGAGAGTGAAAGTGATAAGGTGAGTGGAGATGTGGAGGGAGTGGACTGTAGGGATGAAAGGAGCAGTGGGAGAGCTCAACAGTACCCCTTGAGGCCTGAGGCTGAAGACTGTGCGTTTTATCTCAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTCAATCATCCGCTTAAGAGGAAAAACCAGGCTAAAAAAGATAATGCGGGAGAAAAAGAAGAACAGGAAGAAAGATCAGGGCAGACGGAATGCAAGTATTATTTAAGATCTGGGGGGTGTAAGTTTGGAAAGGCTTGTAAGTTTAATCACACAAGGGGAATGTCTTCATCAGCATCCTCAATTGTAGAGCTTAACTTCCTTGGCCTGCCTATTCGAGTGGGAGAGAAAGAGTGTCACTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCCGATCCTACGGCTGGAGGAGGTGATTCTCCTTCTGGATATGGTAATGGAAGTTCTATTTCATTACAAGGTGTGTCACAATCATCTATATCCTCATGGTCTTCTTCTAGACCATTAAATGAATCCACTCCTTTTGTGCCGGTGATACTTTCAGCTAATCCAGTGGTTTCTCCTCAAAGTTCTGAATGGGATGGATATCAGGCACCTGTCTATCTACCTGAGAGGAATATGCATCTACCTTCAACATATGTCATGAACAACCCAGCTATGGAAACAAATGTTTATATGCACCATCAAAAACAAATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTATTTCTTAAAAACAGGGGATTGCAAGTTTAAATCTAATTGTAAGTTTCACCATCCAAAAAATCGGATTGCAAGATTACCTCCATGCAGTCTTAGTGACAAGGGTCTACCTTTGAGACCGGACCAGAATGTTTGCACATATTACAGCCGTTATGGAATTTGCAAATTCGGACCAGCTTGTAAGTTCGACCACCCACCACCCTCAACTATAAGTGGACTTGATCAACAATCCTCTTACACAAATTCTGCTAGTGTTGATGTGGCTGAAAATGGAGGTGTCAGTGATGGGAACCAACTGTCTCTATAA 1479 0.4422 MEPSESESVTSPTKDSQLGEPSTPVHPLDHDPQPSDLNHVAQDDAALGGELEDKLDLKDEGESEDKGSNLEDGGGNLSDEGAAPEGGKGEGSKVDGGGDVVVVDDDDDDCNGGDEGCDWIENVNESESDKVSGDVEGVDCRDERSSGRAQQYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLKRKNQAKKDNAGEKEEQEERSGQTECKYYLRSGGCKFGKACKFNHTRGMSSSASSIVELNFLGLPIRVGEKECHYYMRTGSCKFGANCKFNHPDPTAGGGDSPSGYGNGSSISLQGVSQSSISSWSSSRPLNESTPFVPVILSANPVVSPQSSEWDGYQAPVYLPERNMHLPSTYVMNNPAMETNVYMHHQKQMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCSLSDKGLPLRPDQNVCTYYSRYGICKFGPACKFDHPPPSTISGLDQQSSYTNSASVDVAENGGVSDGNQLSL* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1752 492 MobiDBLite consensus disorder prediction 101 115 - -
Pvu9g1752 492 Gene3D - 340 419 - -
Pvu9g1752 492 Gene3D - 135 191 - -
Pvu9g1752 492 MobiDBLite consensus disorder prediction 123 148 - -
Pvu9g1752 492 MobiDBLite consensus disorder prediction 1 20 - -
Pvu9g1752 492 ProSiteProfiles Zinc finger C3H1-type profile. 155 183 IPR000571 GO:0046872
Pvu9g1752 492 SUPERFAMILY CCCH zinc finger 154 183 IPR036855 GO:0046872
Pvu9g1752 492 Coils Coil 182 202 - -
Pvu9g1752 492 SUPERFAMILY CCCH zinc finger 250 276 IPR036855 GO:0046872
Pvu9g1752 492 MobiDBLite consensus disorder prediction 46 69 - -
Pvu9g1752 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 252 275 IPR000571 GO:0046872
Pvu9g1752 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 386 411 IPR000571 GO:0046872
Pvu9g1752 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 205 227 IPR000571 GO:0046872
Pvu9g1752 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 159 181 IPR000571 GO:0046872
Pvu9g1752 492 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 433 457 IPR000571 GO:0046872
Pvu9g1752 492 PANTHER PROTEIN PHOSPHATASE RELATED 11 485 - -
Pvu9g1752 492 SUPERFAMILY CCCH zinc finger 389 413 IPR036855 GO:0046872
Pvu9g1752 492 ProSiteProfiles Zinc finger C3H1-type profile. 430 458 IPR000571 GO:0046872
Pvu9g1752 492 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 11 485 - -
Pvu9g1752 492 SUPERFAMILY CCCH zinc finger 428 455 IPR036855 GO:0046872
Pvu9g1752 492 SMART c3hfinal6 251 276 IPR000571 GO:0046872
Pvu9g1752 492 SMART c3hfinal6 155 182 IPR000571 GO:0046872
Pvu9g1752 492 SMART c3hfinal6 384 411 IPR000571 GO:0046872
Pvu9g1752 492 SMART c3hfinal6 202 229 IPR000571 GO:0046872
Pvu9g1752 492 SMART c3hfinal6 430 457 IPR000571 GO:0046872
Pvu9g1752 492 MobiDBLite consensus disorder prediction 1 149 - -
Pvu9g1752 492 SUPERFAMILY CCCH zinc finger 206 229 IPR036855 GO:0046872
Pvu9g1752 492 ProSiteProfiles Zinc finger C3H1-type profile. 249 277 IPR000571 GO:0046872
Pvu9g1752 492 Gene3D - 428 480 - -
Pvu9g1752 492 Gene3D - 192 279 - -
Pvu9g1752 492 ProSiteProfiles Zinc finger C3H1-type profile. 384 412 IPR000571 GO:0046872
Pvu9g1752 492 ProSiteProfiles Zinc finger C3H1-type profile. 202 230 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1752 Pvu-Chr9 24777928 24782632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1752 380 479 C2H2 Transcription Factor Family AT3G02830 46.602 5.37e-22 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu9g1752 zf-CCCH 7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1752 - - gmx:100809906 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2145 3 42243339 42248077 Pvu9g1752 9 24777928 24782632 ECH
Pvu9g1752 9 24777928 24782632 Pvu9g1752 9 24777928 24782632 ECH
Pvu3g2145 3 42243339 42248077 Pvu9g1752 9 24777928 24782632 PCT