Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1749 ATGGGTGGCGAGGAACAAGGAGTTTCTGTTTGTGCTGCCTGCTTCCACAACTGTCTATTGTTCCACCCAACCAAACCAACTTCACCAACCTCTTTCTTCAAGTTCATCACTAGACAAGATTATTTAACAACTTTGTGTATTCCTCCTGCTTTTAGTAGTATTGTGGCCAACATGGTTAACAAGAAAATCAATCTCAATGATTCAAGTGGGCAGCAGTGGAAGGTTAAAGTATCAGAAGTTAATGGTTCTTTTGTTTTTGGGGAGGGATGGAGTAGTTTCTCATTGGGTCTTGGGCTTAAAGTTGGATATCTTTTGGTATTCAATTACATTAAAGATTTGCACTTTGATGTCAAGATCTATGATACTTCTGCCTGTGAAAAGCTTGGTTTTTCTAAAAAAAGAGATCAGAAGAAAAGAAGTAGGGGCAAAATTGTCTCACCAGTTAGAGATGGTATCTTGGTCAGACAAGAACCCAATGCGCCAAAAATGAAAAGGCAGTGCAGCGAGGTTGACTTAGATTTACCACAAAACTCTAAAGAGAGTGGCCAACTTATGCACATATCAGATCACTGTGAAGACCCATGTTATTCAAAAAGACAAGAATTTGACCAGAGCCATGGTGATGATGGGACCATGAAAATTGAGAACGGAGATTTAAATGTTTCTAATGTTGATTATGAATCCAATATATTTGAAAAGGATGCAATGACATGCAGTAAAGATACTATGTTTGAAGGGAAATTCAGTACGGAAGTTGCCTTGGATATATCTGAACTCGAAAAATCTGGAAGAAGTGTTTCTCTAGGTGAGGCAGAGACAAGTACATATGGCAAGACTTCTAATTTGAAATTTGAAGAGAACAAAGCCATCTTGTCCAACATGGAAGCTCAAGAGTGCCAATTTTCCAAGGGCTTAGGTGAAATGAAGAAATTGCCTGAGGACATGACTCCCAACTTGGACAGTTCCATGGATGAATTGAATTTAACAGGTGAAGTGTCTAAACAGTTGAAGAAAGAGCTTGTAACTCTCGTTGAATTGGAAGCAACAGGGTTGCCCACTGAAATTAAGGGACTGTTGGACTCTGACATATTTAATGAAGATAATGCGAGACACTCTAAAACTACACACCTCTCCTGTGTGGTTCCTCATGATAATAAACTGCCCAAATGCCTGCCTATGATTCGCAGGGTAAAAGTAGATCAGCTAAGGAAGATGGTAGTATTTCTTCGGGATCCACTGAGGAGATTGTGGCCGGTCTTTTACCATGAAAAACCGCATTTACAATTACTGGCACATGGATGGTTAGATTTTTGCAGAGCTAATAACATTCAAGCGAAAGATGAGTGTATTTTTGAGGCTGAGGTTGATCCTGAGTGCAAGTCTAAACATATATTATCAGTTCATATAGTCCACAACAAGTGA 1422 0.3931 MGGEEQGVSVCAACFHNCLLFHPTKPTSPTSFFKFITRQDYLTTLCIPPAFSSIVANMVNKKINLNDSSGQQWKVKVSEVNGSFVFGEGWSSFSLGLGLKVGYLLVFNYIKDLHFDVKIYDTSACEKLGFSKKRDQKKRSRGKIVSPVRDGILVRQEPNAPKMKRQCSEVDLDLPQNSKESGQLMHISDHCEDPCYSKRQEFDQSHGDDGTMKIENGDLNVSNVDYESNIFEKDAMTCSKDTMFEGKFSTEVALDISELEKSGRSVSLGEAETSTYGKTSNLKFEENKAILSNMEAQECQFSKGLGEMKKLPEDMTPNLDSSMDELNLTGEVSKQLKKELVTLVELEATGLPTEIKGLLDSDIFNEDNARHSKTTHLSCVVPHDNKLPKCLPMIRRVKVDQLRKMVVFLRDPLRRLWPVFYHEKPHLQLLAHGWLDFCRANNIQAKDECIFEAEVDPECKSKHILSVHIVHNK* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1749 473 Gene3D - 25 125 IPR015300 -
Pvu9g1749 473 SUPERFAMILY DNA-binding pseudobarrel domain 28 125 IPR015300 -
Pvu9g1749 473 Pfam B3 DNA binding domain 32 121 IPR003340 GO:0003677
Pvu9g1749 473 ProSiteProfiles B3 DNA-binding domain profile. 407 473 IPR003340 GO:0003677
Pvu9g1749 473 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 16 470 IPR044837 -
Pvu9g1749 473 CDD B3_DNA 406 452 IPR003340 GO:0003677
Pvu9g1749 473 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Pvu9g1749 473 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 16 470 - -
Pvu9g1749 473 SMART B3_2 32 123 IPR003340 GO:0003677
Pvu9g1749 473 Gene3D - 363 473 IPR015300 -
Pvu9g1749 473 SUPERFAMILY DNA-binding pseudobarrel domain 402 468 IPR015300 -
Pvu9g1749 473 CDD B3_DNA 31 121 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1749 26 126 B3 DNA Binding Superfamily AT4G01580 31.429 4.76e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu9g1749 B3 7.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1749 - - vra:106761496 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1749 9 24691620 24695594 Pvu9g1749 9 24691620 24695594 ECH