Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1728 ATGGCCGCTCTCACCTCTCTCTCCCTCTCGCTCCGCCCCCTCTCTCTCCGCCGCAAACCAACGACCTCAATCTCCGCTTCACTTTCTTCACTCCCAGGGAGCACCCATGGGTCTACAACGAAAGCGCCTCGGGGAAGAGCCAGGCGAAATGAAGGCCCTAGAAAGAGCATGGAGGACTCGGTTCAACGCAAGATGGAACAGTTTTACGAAGGCTCCGACGGGCCTCCGCTTCGCGTTCTTCCCATTGGCGGTTTGGGGGAGATTGGGATGAACTGCATGCTCGTCGGCAACCATGACCGCTATATCCTCATCGACGCCGGTGTCATGTTTCCAGACTATGATGAACTTGGAGTTCAGAAGATTATACCTGACACCACTTTTATAAGAAAGTGGAGCCACAAAATTGAGGCGCTTGTCATAACACACGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATCCCGGCATTGGATTCCAATACACCAATTTTTTCATCTTCCTTTACAAAGGAGCTTATAAACAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCTAGACTCAAAGTATTTAGAATGAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGACTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTAGATGGGAATGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAGGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGTAGGACAATCAGTGAATCAGTAGTGGCAGATGCATTGTTGAGACATATTTCAGCTTCTAATGGAAGGGTCATTACCACCCAATTTGCGTCAAATTTACATCGGCTCGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCCTTAAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCACCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCTCGTGCTGCCTTGAACCTTGCATCATTTGGAAGTAGTCATGCTTTCAAACTAACCAAGGAAGATCTTGTTTTGTATTCCGCTAAGGTTATCCCTGGTAACGAATCTCGTGTGATGAAAATGCTAAACCGTGTATCAGAGATTGGATCAACTATAGTTATGGGAAAAAATGAAGGTCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAAGAAGTACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATCCATGGAGAACTTTTGTTTCTGAAGGAACATGAATTACTAGGAAAATCAACTGGCATTCGCCACACTGCTGTCATTAAGAATGGAGAGATGCTTGGTGTTACACATTTGAGAAATAGAAAAGTCCTTTCTAATGGTTTCATTTCCCTAGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGAGATAGAGCATTTGGTACATCAACTGAACTCTTCATTGATGAAAGAATGAGAATCGCTTTAGATGGCATCATTGTTACTAGCATGGAAATATTTCGCCCTAAAAGTTTAGGTAGTTTGGCTCCGAATACCTTAAAAGGGAAAATAAGGATTACCACAAGATGCTTATGGCTCGACAAAGGGAAGCTGATGGATGCACTCTACAAATCTGCCCATGCCGCTCTTTCAAGCTGCCCTGTAAATAGTCCTCTGGCTCACATAGAAAGAACTGTGTCTGAGGTATTAAGAAAGATGGTGAGGAAGTATAGTGGTAAACGACCTGAAGTTATTTCCATTGCCATAGAAAATCCTGCATCCGCTATTACTGATGAGATAAACACAAAATTGTCTGGCAAAACCCATGCGGGTCTTGGAATATCAACATCAAAAAGAGCAGTGGATAGACATGAGAGAGGAAATCAGCCCACCTCACTGCAAGTTACAGATGATAGTATTGATAATGTAAGTGGAGCTGAGGGTTATTTATCTGAGGAAGACAACACTGCAAGTGGAGCTGATGGTGATATATCCGAGTCAGAGGATTCAGATGAATTTTGGAAACAATTCATTACACCATTACCCGTTGAGAAGCCATTTGGTGCTGACAATGCTTATGATTCACAAAAGGAGCATGAGTCCAATCTGAAGAAAGGTGATTCTAAGAACACTGATGAAGCCAAGTCTGAAGAAACGTCTACCTCTGAACCCAAGTCTTCAAAATCAGTAAAGAGAAATAAATGGAAAACTGATGAAGTTAAGAAGCTGATTGGTATCCGTGAGGAACTACATGACAGATTTCAAATTGTGAAGGGTAGGATGGCCCTCTGGGAAGAGATATCTCAAAAACTGTCTGCTGATGGGATCAGCAGAAGTCCTGGACAGTGCAAATCTTTGTGGACATCTTTGGTACTTAAATATGAGGGGATCAAGAATGAGAAGGATAGCAAGAAAAGTTGGCCATATATAGAGGACATGGAAAGGATAATGTCTGATAAAGAAGCTCCTGCAACAAAATGA 2616 0.427 MAALTSLSLSLRPLSLRRKPTTSISASLSSLPGSTHGSTTKAPRGRARRNEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALVITHGHEDHIGALPWVIPALDSNTPIFSSSFTKELINKRLKEHGIFVPSRLKVFRMRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGNVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASNGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASFGSSHAFKLTKEDLVLYSAKVIPGNESRVMKMLNRVSEIGSTIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVTHLRNRKVLSNGFISLGKENLQLKYSDGDRAFGTSTELFIDERMRIALDGIIVTSMEIFRPKSLGSLAPNTLKGKIRITTRCLWLDKGKLMDALYKSAHAALSSCPVNSPLAHIERTVSEVLRKMVRKYSGKRPEVISIAIENPASAITDEINTKLSGKTHAGLGISTSKRAVDRHERGNQPTSLQVTDDSIDNVSGAEGYLSEEDNTASGADGDISESEDSDEFWKQFITPLPVEKPFGADNAYDSQKEHESNLKKGDSKNTDEAKSEETSTSEPKSSKSVKRNKWKTDEVKKLIGIREELHDRFQIVKGRMALWEEISQKLSADGISRSPGQCKSLWTSLVLKYEGIKNEKDSKKSWPYIEDMERIMSDKEAPATK* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1728 871 MobiDBLite consensus disorder prediction 672 686 - -
Pvu9g1728 871 Pfam Myb/SANT-like DNA-binding domain 777 861 IPR044822 -
Pvu9g1728 871 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 491 IPR036866 -
Pvu9g1728 871 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 434 471 IPR011108 -
Pvu9g1728 871 PANTHER RIBONUCLEASE J 1 871 - -
Pvu9g1728 871 MobiDBLite consensus disorder prediction 19 62 - -
Pvu9g1728 871 Gene3D - 81 493 IPR036866 -
Pvu9g1728 871 SMART Lactamase_B_5a 89 286 IPR001279 -
Pvu9g1728 871 ProSiteProfiles Myb-like domain profile. 772 836 IPR001005 -
Pvu9g1728 871 MobiDBLite consensus disorder prediction 736 777 - -
Pvu9g1728 871 MobiDBLite consensus disorder prediction 730 777 - -
Pvu9g1728 871 Gene3D - 780 840 - -
Pvu9g1728 871 CDD GT1 778 843 - -
Pvu9g1728 871 Pfam Metallo-beta-lactamase superfamily 90 234 IPR001279 -
Pvu9g1728 871 Gene3D - 278 428 IPR042173 -
Pvu9g1728 871 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 871 - -
Pvu9g1728 871 MobiDBLite consensus disorder prediction 44 62 - -
Pvu9g1728 871 MobiDBLite consensus disorder prediction 19 41 - -
Pvu9g1728 871 CDD RNaseJ_MBL-fold 80 491 - -
Pvu9g1728 871 MobiDBLite consensus disorder prediction 652 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1728 Pvu-Chr9 24402762 24413034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1728 779 865 Trihelix Transcription Factor Family AT2G38250 35.955 1.53e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pvu9g1728 Lactamase_B 7.6e-09 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1728 - - gmx:100783850 1497.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1728 9 24402762 24413034 Pvu9g1728 9 24402762 24413034 ECH
Pvu3g2162 3 42420332 42434949 Pvu9g1728 9 24402762 24413034 PCT