Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1714 ATGGAGAACACCCAGCAAGGAGGCCAAGGCCAATCGGGACCCTACGCCGGTGCGGCCGCCGGAAGTGCAGGTGCAGCTGCAGGAGCGCCCCCCTTCCAGCACCTCCTCCACCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTACCAACGCCAAGAGATCGAGCACGTCAACGACTTCAAGAACCACCAGCTACCCCTCGCTCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCTCCGCTGAGGCCCCAATCCTCTTCGCCAAGGCCTGCGAGCTCTTCATCCTTGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGCACCCTCCAGAAGAACGACATCGCCGCCGCCATCACCCGCACCGACATTTTCGACTTCCTTGTTGACATCGTCCCTCGCGACGAGATCAAGGACGATGCTGCGCTCGTCGGGGCCACTGCTAGTGGTGTGCCCTACTACTACCCTCCCATTGGCCAGCCTGCCGGCATGATGATTGGCCGTCCCGCTGTTGATCCCGCCACTGGAGTCTACGTCCAGCCCCCGTCCCAGGCCTGGCAGTCAGTCTGGCAGTCCGCTGCCGACGACGCCTCCTACGGTGGCGCTGGCGGAGCCGGTGCCCAGGGGAGCATTGATGGCCAGAGCTGA 672 0.6339 MENTQQGGQGQSGPYAGAAAGSAGAAAGAPPFQHLLHQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDAALVGATASGVPYYYPPIGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQSAADDASYGGAGGAGAQGSIDGQS* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1714 223 SUPERFAMILY Histone-fold 39 136 IPR009072 GO:0046982
Pvu9g1714 223 Gene3D Histone, subunit A 31 142 IPR009072 GO:0046982
Pvu9g1714 223 Pfam Core histone H2A/H2B/H3/H4 53 127 IPR007125 GO:0003677
Pvu9g1714 223 MobiDBLite consensus disorder prediction 1 23 - -
Pvu9g1714 223 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 223 - -
Pvu9g1714 223 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1714 Pvu-Chr9 24223846 24229645 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1714 25 202 CCAAT-HAP5 Transcription Factor Family AT3G48590 83.957 8.89e-104 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pvu9g1714 CBFD_NFYB_HMF 2.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1714 - - gmx:100783316 335.109