Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1704 ATGGACTGGAATTTGAAAGCAGCTTCTTGGGATTTGGTGGATGTGGATAAGGCTTCCATACCCAACATAGACTCAATGGAGGAGCATAACAGATTTGGAGTTTATAGAATGGAGGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCATGTGGGGAATTCTGGCACTGAATCAGCGTTAGCCAAGTCCAAAGACGTTGCTGCTGGTGCTGGAGTCTCCAAAGTGGCATCCTCACCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAACAGCACAACCCTGACTGTTTCATGCCTTGTGGACGGGTGCAATTCAGATCTTAGCAACTGTAGAGATTACCATAGGCGACATAAGGTGTGTGAACTCCATTCCAAGTCCCCAGAGGTCACAATCGGTGGCCTCAAGCAAAGGTTCTGCCAGCAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGAAAACGTTTAGACGGACACAACAGACGGAGAAGAAAGCCTCAGCCAGAACCTCACACGCGACCTGGTAGTTTTTTATCGAATTACCAAGGTACCCAATTGCTACCCTTCTCAAATCCACACGTGTATCATTCCAGTGCCATGATGAGCTCCCCATGGAATGGAGGACTTGTGAGTTCCTCTGCAGATGCTAGGTTGCACAACCAGCACCACCATCAAGTGCACTTGGTTGATAAACAAGACCTTTTTCTTGGATCTTCGCACAAAGAAGGGAAGCAATTGGCATTCGTACACGGTAACCATCCCTCCACAGGTGCACTCGGCAACCAAACCCTTCCCTTTCCCTCTCCTTCTGTGTGCCACACGCTTCTCAGGACCAGCCCTTTATCAGAAACTTGTGGAGTGAGAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAAATTCGGTGCATGACACTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCTGGGAATGGTTTGAACCAAATGGTGCAGCCTCCCTCGATGTCCCTGATGCAGCCCTTAGGCCTGAGCCTGCAGGATAACAGCAACTTAGAGTCTGTGGAGCGAGTGTTGGTTCCCAATGACAGTGACCATTGTTCCTCCATGTATAGCCTGGGTTCTGATGGATCTCACTGCAATGAAGCCCATCAACTGTTTCCCTTTCAATGGGAATAG 1185 0.4827 MDWNLKAASWDLVDVDKASIPNIDSMEEHNRFGVYRMEGEFSVDLKLGHVGNSGTESALAKSKDVAAGAGVSKVASSPSGSSKRARAINSTTLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKSPEVTIGGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPHTRPGSFLSNYQGTQLLPFSNPHVYHSSAMMSSPWNGGLVSSSADARLHNQHHHQVHLVDKQDLFLGSSHKEGKQLAFVHGNHPSTGALGNQTLPFPSPSVCHTLLRTSPLSETCGVRSKMFCESLTTTNSVHDTPCALSLLSSSQTHTPGNGLNQMVQPPSMSLMQPLGLSLQDNSNLESVERVLVPNDSDHCSSMYSLGSDGSHCNEAHQLFPFQWE* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1704 394 MobiDBLite consensus disorder prediction 159 173 - -
Pvu9g1704 394 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 6 394 - -
Pvu9g1704 394 SUPERFAMILY SBT domain 95 176 IPR036893 GO:0003677|GO:0005634
Pvu9g1704 394 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 394 IPR044817 GO:0003677
Pvu9g1704 394 MobiDBLite consensus disorder prediction 158 183 - -
Pvu9g1704 394 Gene3D - 89 158 IPR036893 GO:0003677|GO:0005634
Pvu9g1704 394 Pfam SBP domain 97 170 IPR004333 GO:0003677
Pvu9g1704 394 ProSiteProfiles Zinc finger SBP-type profile. 94 171 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1704 Pvu-Chr9 24130481 24134675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1704 1 394 SBP-box Gene Family AT5G50670 39.853 3.15e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu9g1704 SBP 3.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1704 - - gmx:100787407 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1704 9 24130481 24134675 Pvu9g1704 9 24130481 24134675 ECH
Pvu2g2945 2 44988045 44991726 Pvu9g1704 9 24130481 24134675 PCT