Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1696 ATGGCAGCTTTTTCATACCAATACCATCCTTTTCTGGTTGATCCTGCATTCTTCCCCTCCAACATGAACACCCCTTCTTCTCCTCCTCCTCCCCAGTTTCACCTCCCTCAGGAAACATCTTTCAATGTCACAAACCAGGAGACTAGCTGTGTTGACCAAAGCTCCAAGATCACCATCAGTGACAATGAGCCTTCTGTCACTAAAAACCTTAGCCCTCAGTCCTCTGTGGTGGTGGACAAGCTTGAAACTGGCGAGCAGGTCACTCAGAAGGTTCACACTCCTGTGGAGAAGAAAAGGAGAACCAGAAATGGATCTTCCTTGACTAGTAACACTCAATCCAAGGATACTGCAGCAGAAGGAAGAACCAAGAAACAAAGAAAGAACAATGGTGGGGTGAAAGAAGAGGACAAGGCAAAAGTAGAGAAGAAGGAGCAGAGAAAATGTCCTGAAGAGCCCCCAACAGGCTATATCCACGTCAGAGCAAGAAGGGGTCAGGCAACGGATAGCCACAGCCTTGCTGAGAGGGTGAGAAGAGAGAAGATAAGTGAAAGGATGAAGGTGTTGCAACGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTTGAGTTCTTGTCAATGAAGCTTGCTTCCATGAATCCCATGTTTTATGACTTGTCATCGGACATAGACACCCTCTTGGTTAGACCAGAGAAACTAAATAGCATGGCATCACCATCACCAATACCATGTGTGTCACATTGCAACAGCCCCAACCAAGCCACAACTTTTGCTGATACAACCACCATGACCCCCACCAACATCTTTCACAATGCTAGTGACTATCTTTTGGATAACTCAACTTCATTTTTTCTTCAAGGGCAGAGGTCAACTATGTTCTCTGAGGAGGATACCGGTAGTCATCTCTGGGACGCAGAGGACCAGCGACAAAAGTTTCTTCATCCATATGGATTCAGCAACAACTTATGTTCCTTTCATTAA 1032 0.4535 MAAFSYQYHPFLVDPAFFPSNMNTPSSPPPPQFHLPQETSFNVTNQETSCVDQSSKITISDNEPSVTKNLSPQSSVVVDKLETGEQVTQKVHTPVEKKRRTRNGSSLTSNTQSKDTAAEGRTKKQRKNNGGVKEEDKAKVEKKEQRKCPEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKVLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASMNPMFYDLSSDIDTLLVRPEKLNSMASPSPIPCVSHCNSPNQATTFADTTTMTPTNIFHNASDYLLDNSTSFFLQGQRSTMFSEEDTGSHLWDAEDQRQKFLHPYGFSNNLCSFH* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1696 343 MobiDBLite consensus disorder prediction 22 48 - -
Pvu9g1696 343 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 343 IPR024097 GO:0006355
Pvu9g1696 343 Gene3D - 162 235 IPR036638 GO:0046983
Pvu9g1696 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 232 IPR036638 GO:0046983
Pvu9g1696 343 SMART finulus 171 221 IPR011598 GO:0046983
Pvu9g1696 343 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 343 - -
Pvu9g1696 343 MobiDBLite consensus disorder prediction 117 155 - -
Pvu9g1696 343 MobiDBLite consensus disorder prediction 78 155 - -
Pvu9g1696 343 CDD bHLH_AtBPE_like 155 240 - -
Pvu9g1696 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 215 IPR011598 GO:0046983
Pvu9g1696 343 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1696 Pvu-Chr9 23935079 23937953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1696 1 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 46.768 2.20e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu9g1696 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1696 - - gmx:100806696 586.645