Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1673 ATGATGTCCAGAATGAACAGCGTTTGTTGGATGGAGGAACGTGAAGACGAGAACAACTCAGGTTCTTGGGCCAGAAACAAGCCCAACACCACCATCATAGCCACCGACACAACAACCACATCAAAACCAACAACCACAGCAGCAGCAGCAGCTTTCGTAGAAAACAACACTACCCGCGACGACTTAGCATCTCTCTGCGCCTTCAAACCCATGCTGGAACTGGACGACGAATGGTACATCAGCAGCCACCACCAGCATAACAACCACCACCACCAAGACATGACCTTCTCCCCCACCTTCCCCGACTCCGACAACCTCCTCCTCCCCGCCGTAGACTCCTCCTCCTCCTCCTCCGTCTTCACAAACCTCGACCCTTCCTCCTCCCACCTCCACTACTTCCTCCCTCCCAAGCCTCCCACTCTCTCTTCCCTCCTCAACCCCTTCGATATCCCCTTTCTTGACCCTCAAGCTTCCTCATCCTTCCCGCTTCTTCCCTCTGCCCATTTCCCCTCCGACACGCCTCCTCAGACCGCCACCGCCACCGCCTTCGCCGGCTTCCACAGCCTTGACGACGGGTCCTCGAAGCCTCTCTTTCAGCAGCGCTCGAAGATTCTGCGGCCCCTGGAGTCCCTGACTCCCTCCGGGGCGCCACCCACGCTCTTTCAGAAGAGGGCGGCGCTGAGGAAGAACATGTCTGGTGGGGAAGGGAGTGAGAAGAAGAGGAAGGAGAGGGAGGAGGTGGTGGAGGATGTGAGTTTTGATGGGTCTGGGTTGAATTATGATTCCGATGATTTTACTGAGATTAATAACAATGGTGGTAAGGTGGATGAGGGTGGTGCTAAGAAGGGTGGGAACAGTTCCAATGCCAACAGCAGCGTGACTGGATTGGATCAGAAAGGGAAGAGGAAGGGAATGCCTGCTAAGAATTTGATGGCAGAACGACGGCGTAGGAAGAAGCTCAATGATCGACTCTACATGCTTAGGTCCGTTGTTCCTAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATCGAGTATCTTAAGGAGCTTCTGCAAAGGATCAATGATCTTCATAACGAGTTGGAGTCTACATCGGCTTCTTCTTCCCTCACTCCTTCCTCCAATTTCCATCCCTTGACGCCTACTCCTCCCACCCTGCCTAGTCGTATCAAAGAAGAATTGTGCCCCACCTCATTGCCAAGCCCCAATGCTCAACCTGCTAGGGTTGAAGTTCGGCTACGCGAAGGAAGGGCTGTTAACATCCATATGTTTTGTGCCCGCAAGCCTGGTCTGTTGCTCTCAACCATGAGGGCTATGGATAACCTAGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAGATCAAAGCAGTTCTCTTGGATTCAGCTGGCTACAGTGGCATGATGTAA 1488 0.5262 MMSRMNSVCWMEEREDENNSGSWARNKPNTTIIATDTTTTSKPTTTAAAAAFVENNTTRDDLASLCAFKPMLELDDEWYISSHHQHNNHHHQDMTFSPTFPDSDNLLLPAVDSSSSSSVFTNLDPSSSHLHYFLPPKPPTLSSLLNPFDIPFLDPQASSSFPLLPSAHFPSDTPPQTATATAFAGFHSLDDGSSKPLFQQRSKILRPLESLTPSGAPPTLFQKRAALRKNMSGGEGSEKKRKEREEVVEDVSFDGSGLNYDSDDFTEINNNGGKVDEGGAKKGGNSSNANSSVTGLDQKGKRKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTSASSSLTPSSNFHPLTPTPPTLPSRIKEELCPTSLPSPNAQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRAMDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYSGMM* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1673 495 MobiDBLite consensus disorder prediction 230 310 - -
Pvu9g1673 495 MobiDBLite consensus disorder prediction 283 297 - -
Pvu9g1673 495 MobiDBLite consensus disorder prediction 233 251 - -
Pvu9g1673 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Pvu9g1673 495 CDD ACT_UUR-ACR-like 424 484 - -
Pvu9g1673 495 Gene3D - 298 369 IPR036638 GO:0046983
Pvu9g1673 495 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 166 495 - -
Pvu9g1673 495 SMART finulus 310 359 IPR011598 GO:0046983
Pvu9g1673 495 PANTHER BHLH TRANSCRIPTIONAL FACTOR 166 495 - -
Pvu9g1673 495 CDD bHLH_AtAMS_like 307 362 - -
Pvu9g1673 495 Coils Coil 343 370 - -
Pvu9g1673 495 Pfam Helix-loop-helix DNA-binding domain 311 353 IPR011598 GO:0046983
Pvu9g1673 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 307 371 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1673 Pvu-Chr9 23563688 23566524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1673 201 468 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 66.912 7.34e-111 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu9g1673 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1673 - - vra:106778861 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2267 3 43702370 43703800 Pvu9g1673 9 23563688 23566524 ECH
Pvu9g1673 9 23563688 23566524 Pvu9g1673 9 23563688 23566524 ECH
Pvu2g2905 2 44611061 44612679 Pvu9g1673 9 23563688 23566524 PCT