Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1672 ATGGCATCATCCGAGGTGACGATGAAGGGAAATTGCTTGAACCATATCGACGGCGGAGCTTCGGAGGCTCAGTCGCCGGCCACGGCCAAAGACGCAGAAGCTGCACTTTTCAGGGAACTGTGGCACGCGTGTGCCGGTCCTCTCGTGACCGTGCCGCGCGAAGGAGAGCGCGTGTTTTATTTTCCTCAGGGACATATCGAGCAGGTTGAAGCGTCGACGAATCAGGTGGCGGACCAGCACATGCCCGTTTACGATCTCCCACCCAAGATCCTTTGTCGGGTCATCAACGTGCAGCTGAAGGCCGAGCCCGACACGGATGAGGTGTTCGCTCAGGTCACCTTGCTTCCGGAGCCAAATCAAAATGAGAATGACGTGGAGAAAGAGCCGCCACCGCCTCCGCCTCCGCGGTTTCACGTTCATTCTTTCTGTAAAACCCTGACAGCGTCCGATACCAGTACCCATGGTGGGTTTTCCGTGCTGAGACGGCATGCTGATGAATGCCTTCCCCCTCTGGATATGTCGAAGCAGCCACCCACTCAGGAATTGGCAGCAAAGGATCTTCATGGGAACGAATGGCGATTTAAACATATCTTTCGGGGTCAACCCCGTAGACACTTGCTTCAGAGTGGTTGGAGTGTTTTTGTTAGTTCCAAAAGGCTTGTCGCTGGGGATGCGTTTATATTTCTTAGAGGTGAGAATGGGGAACTTCGAGTTGGTGTCAGGCGAGCAATGAGACAGCAGGGTAATGTTCCATCCTCAGTTATCTCCAGTCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACGGGGACAATCTTCACTGTCTATTACAAACCTAGGACTAGTCCAGCTGAATTCATTGTTCCGTATGATCAATATATGGAGTCTCTCAAAAACAGTTATAGCATCGGGATGCGGTTCAAAATGAGGTTTGAAGGAGAAGAGGCCCCAGAGCAGAGGTTTACTGGTACAATTGTTGGAATAGAAGATTCTGATCCCAACAGGTGGAGGGAATCTAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACACCCCTCGTCCTGAGAGGGTTTCCCCTTGGAAAATAGAGCCCGCTCTTGCGCCTCCGGCTCTAAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGCAATTCCTCCATCCCCAGATTCTTCTGTCCTTACTCGAGAAGCATCATCTAAAGTAAGCATAGACCCTTCACCGGCAAATGGATTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTATACTGAAAGCATTGACTCTGATGCCGCTGAGAAATCTGTTGTTTGGCCGCCTGCTGCAGTAGATGATGAAAAGATTGATGTTTCTACGTCAAGGAGGTATGGGTCGGAGAGTTGGATGTCAATGGGAAGAAACGAGCCTACATATTCTGATCTTCTTTCAGGCTTTGGGGCCGGTGGGGATTCTTCTCATTCATCCTTCATGGATCAAATGAGCCCTGTTGCTTATCCCACAAGAAAGCAATCGTCGGATCACGAAGGCAAACTTCACATGCCTCAGCCGTGGCCTGTAATGCCCTCTAGTCTTTCGTTAAATATATTGGACTCTAATACAAAAGGTCCTGCACATGGTGGTGATCCAACTTACCAAGCTCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATACCCTGCTCTGCATGGTCATAAAGTTGAGCATTCACATGGAAACTTGATGCCGCCACCCCCACCTGCACCTGTCAACCAATATCAGATTCCTTGTTCAAGAGAACTTATGTTAAAACCAGTGCCAGCAAAAACATTTGAGGCTGTGAAGTTAAAAGATGGTGACTGTAAGCTATTTGGCTTCTCACTTATCAGTGGCCCTATTGTACCAGAGCCTCCTGTATCGCAAAGAAATATGAACGAACCTACTGGTCAGATGCATCTTACGCCACACCAACAAAGAACATCCGAAAATGATGAGAAGTCAGACCACTCAAAGGGCTCAAAAACTGCAGATGATCTAATTGTTGATGACCATGATAGACCATTACAGGCTTCTCAGCTGCATGCGAAAGATGGTCAAGCCAAACCCCTCAGTAGTTCTGCTAGGAGTTGCACTAAAGTTCACAAGAAGGGCATTGCACTTGGTAGGTCAGTGGACCTCACAAAATACACTGGCTATGATGAATTAGTAGCTGAATTGGATCAGCTGTTTGAATTTGAGGGAGAATTATTGTCAACTAAAAAAGATTGGCTTATTGTCTATACTGATAATGAGGGTGATATGATGCTTGTAGGCGATGACCCATGGCAGGAATTCTGTGCCATGGTTCGCAAAATTTACATCTACCCTAAAGAGGAGATCCAGAAAATGAGCCCGGGTACCTTGAGCTCAAAAAATGAAGAGAACCAGTCGGGTAGTGAAGGTGCAGATGCAAAAGATGTTAAATGTCTGCCGCCTCAAAAGTTCAATTATGAAAATGGACTTGACGCGTGA 2532 0.4775 MASSEVTMKGNCLNHIDGGASEAQSPATAKDAEAALFRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEPNQNENDVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELAAKDLHGNEWRFKHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNSYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPNRWRESKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAIPPSPDSSVLTREASSKVSIDPSPANGFPRVLQGQEFSTLRGNYTESIDSDAAEKSVVWPPAAVDDEKIDVSTSRRYGSESWMSMGRNEPTYSDLLSGFGAGGDSSHSSFMDQMSPVAYPTRKQSSDHEGKLHMPQPWPVMPSSLSLNILDSNTKGPAHGGDPTYQARGNLRYSAFGEYPALHGHKVEHSHGNLMPPPPPAPVNQYQIPCSRELMLKPVPAKTFEAVKLKDGDCKLFGFSLISGPIVPEPPVSQRNMNEPTGQMHLTPHQQRTSENDEKSDHSKGSKTADDLIVDDHDRPLQASQLHAKDGQAKPLSSSARSCTKVHKKGIALGRSVDLTKYTGYDELVAELDQLFEFEGELLSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSGSEGADAKDVKCLPPQKFNYENGLDA* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1672 843 Gene3D - 139 244 IPR015300 -
Pvu9g1672 843 MobiDBLite consensus disorder prediction 378 394 - -
Pvu9g1672 843 MobiDBLite consensus disorder prediction 641 688 - -
Pvu9g1672 843 PANTHER AUXIN RESPONSE FACTOR 2 16 822 - -
Pvu9g1672 843 SMART B3_2 142 244 IPR003340 GO:0003677
Pvu9g1672 843 Gene3D - 305 375 - -
Pvu9g1672 843 ProSiteProfiles PB1 domain profile. 715 797 IPR000270 GO:0005515
Pvu9g1672 843 SUPERFAMILY CAD & PB1 domains 715 792 - -
Pvu9g1672 843 MobiDBLite consensus disorder prediction 804 843 - -
Pvu9g1672 843 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Pvu9g1672 843 Gene3D - 711 804 - -
Pvu9g1672 843 MobiDBLite consensus disorder prediction 648 664 - -
Pvu9g1672 843 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Pvu9g1672 843 MobiDBLite consensus disorder prediction 376 424 - -
Pvu9g1672 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 822 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu9g1672 843 MobiDBLite consensus disorder prediction 395 416 - -
Pvu9g1672 843 CDD B3_DNA 140 242 IPR003340 GO:0003677
Pvu9g1672 843 SUPERFAMILY DNA-binding pseudobarrel domain 138 271 IPR015300 -
Pvu9g1672 843 MobiDBLite consensus disorder prediction 665 688 - -
Pvu9g1672 843 Pfam AUX/IAA family 756 802 IPR033389 -
Pvu9g1672 843 Pfam Auxin response factor 268 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1672 Pvu-Chr9 23557877 23563227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1672 1 828 B3 DNA Binding Superfamily AT5G62000 64.815 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu9g1672 AUX_IAA 3e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1672 - - gmx:100803498 1544.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1672 9 23557877 23563227 Pvu9g1672 9 23557877 23563227 ECH
Pvu2g2903 2 44603605 44608648 Pvu9g1672 9 23557877 23563227 PCT
Pvu9g1672 9 23557877 23563227 Pvu3g2173 3 42568436 42571125 PCT