Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1670 ATGGATTTCTCAAAACTCAATGACTCGCCCATGTTCCGCCAGCAGCTTCAGTGCATGGAAGAGAGTTCAGAATCCTTACGCTCGAGATGTTTCAAGTTCTACAAAGGATCTCGAAAGTACACGGAAGGGCTTGGAGATGCATATGATGGAGATATTGCATTTGCAAGTGCCCTTGAAAGTTTTGGAGGAGGGCATAATGATCCTCTATTTGTGACTTTGGGAGGACCAGTTATGACCAAATTTTCTATTGCATTGAGAGAAATCAGTACATATAAGGAAGTTCTTCGGTCACAGGGGGAGCACATGCTAAATGACCGGTTACTGAACATGCTAAACGTGGATATCCTAGATGTCAAGGAAGCTCGAAGGCGTTTTGAGAAAGCTTCCCTTGTATATGATCAGGCACGTGAGAAGTTTATGTCTCTGAGAAAAAGCACTAGGATTGATATTGCCACTGTCGTAGAAGAGGAATTGCACAATGCAAGATGCTCATTTGAGGAATCTCGTTTCAATCTGGTCAGTGCTCTTCACAATGTTGAGGCCAAGAAGAGGTTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGATATTATCGACAGGGATATCAGCTATTACATGAGCTCGAGCCTTTCATTATCGAGGTTTTGGCTTATACACAAAAGGCAAGAGAAAGTTACAATGAGGAGCAGATTAGTCTTTGTGAAAGAATGCTGGAGTACAAAAAACATGTTCATCATGAAAGTATGTTGTCCTTGAATGGCCCTTACATTTCTCCAGGTAGAGATGGGAATCCAGTGCAGCCTTTTTCAAGGATATCAAATAAAGTGGCAGATGCTGTAACAGAGTCTGCTGAAAATGGAAAGATTCAAATCATTCGGCAAGGATATCTCTCTAAACGATCCTCAAATTTGAGGGGTGATTGGAAGAGAAGGTTCTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTTTCGTAAACCATGGAATGGATTACATAGTAGCAATCCGTCATTGGTACACAAAAATTGTGCCACTGATAATAGTGCTGGAATTTTGAGTCGCCTGCTTTCTTCACATTACCATGGAGTTATGCCTGATGAAAAATCTGTAGCACGTCACACAGTGAACCTGCTCACATCAACAATCAAGTCTGATGCTGAACAGTCAGGTTTAAGGTTCTGCTTCAGGATTATTTCACCGTCAAAGAGTTACACATTGCAGGCAGAAAATGCTCTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTGATTGCCTCCTTATTGAGTGCACAGACACTGTCAGATGTGTCAGAAAATGATAACGGTCAGTCTGCCAACAAGCTTCTTTTGTTAAAAGGTTGTCCAGATGAGGATCAAGCATTGAGTGGGGATTCTATGTCTTCCGAAGACTTGAAGAAGAATAAGCAAAGTACAAAAAGTGAAAAGCCAATTGAAATTCTTAGAAAAGTTAGTGGCAATGACAAATGTGCTGATTGTGATAAACCTGATCCAGACTGGGCATCCTTAAACCTTGGCATTCTCATATGCATTGAATGTTCCGGTGTCCACCGGAATCTTGGTGTACATGTATCAAAAGTAAGATCACTTACCCTTGATGTAAAAGTATGGGATTCAGCTGTCTTGAGCATGCTTCAGTCACTGGGGAATCACTTTGCAAACTCAGTTTGGGAGGAACTGTTGCAATCATCATCATGTACTTCACAAACAGATGAGAGTCCTGATGGATCATCCAAGCCACAGAAAAAGTTATTTCATGCAAGAAAACCATCACATGATGATCCTATTTCACTAAAGGAAAGGTTCATTCATGCAAAGTATGATGCAAAAGTCTTTGTTAGCCGGATAAAGAACAACGACTGTCACCTTTCAACGGGACAACAGTTGGCAGAAAGCATCAAAGCCAATGACAAGAAAGCAGTGTACCGACACATTGTGAAATCTGATGTGAATGTCAATGCTCTTAGTGGTGAAGCAGGCTTTTCTTCCAACATCTCTTCTTCAACTAATGATCCAAACACAACTCAACCAGAGGAGGACATACCAGATGGTTCTACTGTGCTTCACCTGGCATGCCGAAGTTGTGATGTTGCAATGGTAGAGCTACTCCTACAGTATGGGGCAGACATAAATGCTATTGATTCTAAAGGAAAGACACCACTACATTACTGCACTAGGATGGGGAAGAATGCAACTACAAAAGTGCTTATTACAAGGGGGGCCAATCCACTTGCCGTAGATAAAGAAGGCAACACTCCTTTTAAGCTTGCACCAGAATCTGACCATGTTGACAAAAATACTCTTGCTCTTAACCAGGAAACGACTCAAAACTCACTAGAAAAATGA 2379 0.4149 MDFSKLNDSPMFRQQLQCMEESSESLRSRCFKFYKGSRKYTEGLGDAYDGDIAFASALESFGGGHNDPLFVTLGGPVMTKFSIALREISTYKEVLRSQGEHMLNDRLLNMLNVDILDVKEARRRFEKASLVYDQAREKFMSLRKSTRIDIATVVEEELHNARCSFEESRFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYYRQGYQLLHELEPFIIEVLAYTQKARESYNEEQISLCERMLEYKKHVHHESMLSLNGPYISPGRDGNPVQPFSRISNKVADAVTESAENGKIQIIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYFRKPWNGLHSSNPSLVHKNCATDNSAGILSRLLSSHYHGVMPDEKSVARHTVNLLTSTIKSDAEQSGLRFCFRIISPSKSYTLQAENALDQMDWMEKITGVIASLLSAQTLSDVSENDNGQSANKLLLLKGCPDEDQALSGDSMSSEDLKKNKQSTKSEKPIEILRKVSGNDKCADCDKPDPDWASLNLGILICIECSGVHRNLGVHVSKVRSLTLDVKVWDSAVLSMLQSLGNHFANSVWEELLQSSSCTSQTDESPDGSSKPQKKLFHARKPSHDDPISLKERFIHAKYDAKVFVSRIKNNDCHLSTGQQLAESIKANDKKAVYRHIVKSDVNVNALSGEAGFSSNISSSTNDPNTTQPEEDIPDGSTVLHLACRSCDVAMVELLLQYGADINAIDSKGKTPLHYCTRMGKNATTKVLITRGANPLAVDKEGNTPFKLAPESDHVDKNTLALNQETTQNSLEK* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1670 792 MobiDBLite consensus disorder prediction 587 603 - -
Pvu9g1670 792 MobiDBLite consensus disorder prediction 776 792 - -
Pvu9g1670 792 CDD BAR_SFC_plant 15 215 IPR035670 -
Pvu9g1670 792 SUPERFAMILY ArfGap/RecO-like zinc finger 486 625 IPR037278 -
Pvu9g1670 792 Gene3D - 639 792 IPR036770 -
Pvu9g1670 792 SMART arf_gap_3 486 631 IPR001164 GO:0005096
Pvu9g1670 792 ProSiteProfiles Ankyrin repeat profile. 727 759 IPR002110 GO:0005515
Pvu9g1670 792 ProSiteProfiles Ankyrin repeat profile. 694 726 IPR002110 GO:0005515
Pvu9g1670 792 SUPERFAMILY Ankyrin repeat 660 775 IPR036770 -
Pvu9g1670 792 SMART ANK_2a 694 723 IPR002110 GO:0005515
Pvu9g1670 792 SMART ANK_2a 727 756 IPR002110 GO:0005515
Pvu9g1670 792 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Pvu9g1670 792 ProSiteProfiles PH domain profile. 294 430 IPR001849 -
Pvu9g1670 792 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Pvu9g1670 792 ProSiteProfiles Ankyrin repeat region circular profile. 694 725 - -
Pvu9g1670 792 MobiDBLite consensus disorder prediction 465 487 - -
Pvu9g1670 792 Pfam Ankyrin repeats (many copies) 696 742 IPR002110 GO:0005515
Pvu9g1670 792 Pfam PH domain 296 429 IPR001849 -
Pvu9g1670 792 Gene3D - 287 445 IPR011993 -
Pvu9g1670 792 CDD PH_ACAP 297 434 - -
Pvu9g1670 792 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 785 - -
Pvu9g1670 792 Coils Coil 118 138 - -
Pvu9g1670 792 MobiDBLite consensus disorder prediction 578 603 - -
Pvu9g1670 792 PANTHER CENTAURIN/ARF 1 785 IPR045258 GO:0005096
Pvu9g1670 792 MobiDBLite consensus disorder prediction 768 792 - -
Pvu9g1670 792 Gene3D Arf GTPase activating protein 467 632 IPR038508 -
Pvu9g1670 792 SUPERFAMILY PH domain-like 294 445 - -
Pvu9g1670 792 Pfam Putative GTPase activating protein for Arf 488 624 IPR001164 GO:0005096
Pvu9g1670 792 ProSiteProfiles Ankyrin repeat region circular profile. 727 753 - -
Pvu9g1670 792 SMART PH_update 295 432 IPR001849 -
Pvu9g1670 792 MobiDBLite consensus disorder prediction 473 487 - -
Pvu9g1670 792 Pfam BAR domain of APPL family 6 233 - -
Pvu9g1670 792 CDD ArfGap 489 618 - -
Pvu9g1670 792 ProSiteProfiles ARF GTPase-activating proteins domain profile. 486 631 IPR001164 GO:0005096
Pvu9g1670 792 PRINTS HIV Rev interacting protein signature 498 517 IPR001164 GO:0005096
Pvu9g1670 792 PRINTS HIV Rev interacting protein signature 517 534 IPR001164 GO:0005096
Pvu9g1670 792 PRINTS HIV Rev interacting protein signature 540 561 IPR001164 GO:0005096
Pvu9g1670 792 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1670 Pvu-Chr9 23489781 23497230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1670 496 624 C2H2 Transcription Factor Family AT4G21160 43.846 3.02e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1670 K12489 - gmx:100797073 1265.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1670 9 23489781 23497230 Pvu9g1670 9 23489781 23497230 ECH
Pvu2g2902 2 44567325 44579805 Pvu9g1670 9 23489781 23497230 PCT