Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1666 AAGAGTGAAATGGCGGCATCACCTGGCTGTATTTTGAATACTTCATCACCCCGTGCAACAAATGCAAAATCTGGTTTGCCAATGTCTCATACTACTCTATCTGGGGAAATTACAGAAGACCATTTTGGCAGAGAAGCAGGCACTATAGAGATGCTGAAGGATTCCATGGAAACATTTAATTATAGTAAGAGGTCATGGTCTAATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTCTAATTGGGAGCAAGATTGTCCCCGGTGCTGCCTCATGTGAAAGTAGTCTATTTTCAAGCTCGCTGTCTGAGATGTTTAGCCAAAAGTTGAGGTTATTGGGGAATGGAGTGCTGTCTGGTCAACCCATTACTGTTGGTTCCCTTCCTGAGGAAGAAGCGTATAAATCTCTAGGAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGACCTGTTTTCTGGAGTCACTGACGAGTTAGGATGCAGTACTCGTGCTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAACATCTAATTTCTGGAAACGGAACCAGTTTCGTGGATGAAGATCCTGATTACTTTGGAGTTTCTAAAGGAAAAATTCCATTCCGTGAACAATCTTCTAGAACACTTTTTGTTAGAAATATCAATAGCAATGTTGAAGACTCTGAACTTAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATTTACACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCATATTATGATCTAAGGGCAGCACAAAAAGCAATGAAGGCACTTCAAAATAGGTCATTGAGATCTAGGAAACTGGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAGAAAGATATTGGTCATGGTACACTGATGATATCCGATCTTGATTCATCTGTTTTAAAAGATGAACTTCAACAGATTTTTGGGTTTTATGGAGAAATTAGAGATATCTATGAATATCCGCAATTGAATCATGTCAAATTTATCGAATTTTATGATGTTCGAGCTGCGGAAGCTTCTCTTCGTGCATTGAATGGGATCCGCTTTTCTGGGAAGCACATTAAGCTTGAGCCCAGCCTTCCCATGATTGCAACATGTATGATGCACCAGTCTCAGAAGGGACAAGATGAACCTGATCTTGGTCATAGTCTTAGTGACAACATTTCCTTAAGACATAATGCAGGAGTGTCATCTGGATTTATTGCATCTGCTGGCAGCTTGGAAAACGGATATAATCAAGGGTTTCATTCTGCAACACGGCAACCTACTTTCATTGATAAATCACTATTTAATATGAATTCTAACATTCACAAGACCGCAAGAGGTGCATCTAATGGAAAAGTATCTGGTGTTTTTGAGGCCAGTAACACTATTGACGCAATGAAATTTGCATCCGTTTCGAGGTTCCATCCTCATTCTTTACCAGAATATCGCGATAGCTTAGCTAATGGCAGTCCTTACAACTTTTCAAGTACCATTAACATGGCTGCCAATATTGGAAATGGATCAACGGAATCATCTGACAGCAGGCACATTCAGGGAATAAACTCAACTGGGAACCTAGCAGAGTTTAATACAGGAGGAAATGGAAACCGCCCCAGTCATGGACTTTATCATATGTGGAATGGCTCCAACTTGCATCAACAAACTCCTTCAAATGCCATGCTTTGGCAGAAAACACCGTCCTTTGTTAATGGTGCTGGTTCTCCATGTCTTCCACAGATACCCAGTTTTCCTAGAACACCTCCCCATGTGCTTAGAGCATCACATATAGACCATCAAGTGGGATCAGCACCAGTTGTTACTGCCTCGCCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCGCCTGATGGTTCTGGTTTTAGATTAGGTTCTGTAGGAAGTCCTGGCTTTCATGGTAGCTGGCAGATGCACCCTCCTGCTTCTCACAACATGTTTTCTCATGTCAGTGGGAATGGTACAGAATTGACATCAAATGCTGGGCAGGGCTCTCCTAAGCAGTTATCACATGTTTTACCTGGGAGACTTCCCATGAATTTGGTTTCTAAATTTGATTCTACCAATGAACGTATGAGAAACCTCTATCCTCGAAGAAGCGAACCAAACACTAACAGCAATGCAGATAAAAAACAGTATGAACTTGACCTAGGCCGCATATTGCGTGGGGATGATAACCGAACAACGCTCATGATAAAAAATATTCCGAATAAGTATACTTCAAAGATGCTTCTTGCTGCCATTGATGAACAATGTCGAGGAACATATGATTTTCTGTATTTGCCCATTGATTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTTGTCAAATTATTCCATTCCACAAGGCCTTTAACGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTAGCAGTACTCGCATATGCCCGAATTCAAGGAAAAGCTGCTCTTATTGCTCATTTTCAGAATTCAAGCCTGATGAATGAGGATAAACGTTGCCGCCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGCGATCCGGAGCCTTTTCCCTTGGGTAACAACATTAGAGTGAGGCCAGGGAAATCTCGCGCAAATGGTAGTGAGGAGAATCGCAGCCAAGGGAACCCTTTATCTTTGGCAAGTGGAGAAGACTCTGGGAATGGAATGGAATCATCTTCGATCTCTTCAAAAAACTCTGACTGA 2778 0.4161 KSEMAASPGCILNTSSPRATNAKSGLPMSHTTLSGEITEDHFGREAGTIEMLKDSMETFNYSKRSWSNVHRQPASSSYGLIGSKIVPGAASCESSLFSSSLSEMFSQKLRLLGNGVLSGQPITVGSLPEEEAYKSLGEIEADTIGNLLPDEDDLFSGVTDELGCSTRARMNDDFEDFDLFSSSGGMELEGDEHLISGNGTSFVDEDPDYFGVSKGKIPFREQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQKAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLKDELQQIFGFYGEIRDIYEYPQLNHVKFIEFYDVRAAEASLRALNGIRFSGKHIKLEPSLPMIATCMMHQSQKGQDEPDLGHSLSDNISLRHNAGVSSGFIASAGSLENGYNQGFHSATRQPTFIDKSLFNMNSNIHKTARGASNGKVSGVFEASNTIDAMKFASVSRFHPHSLPEYRDSLANGSPYNFSSTINMAANIGNGSTESSDSRHIQGINSTGNLAEFNTGGNGNRPSHGLYHMWNGSNLHQQTPSNAMLWQKTPSFVNGAGSPCLPQIPSFPRTPPHVLRASHIDHQVGSAPVVTASPWERQHSYLGESPDGSGFRLGSVGSPGFHGSWQMHPPASHNMFSHVSGNGTELTSNAGQGSPKQLSHVLPGRLPMNLVSKFDSTNERMRNLYPRRSEPNTNSNADKKQYELDLGRILRGDDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPCQIIPFHKAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKSRANGSEENRSQGNPLSLASGEDSGNGMESSSISSKNSD* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1666 925 MobiDBLite consensus disorder prediction 7 30 - -
Pvu9g1666 925 Pfam RNA recognition motif 2 749 845 IPR007201 -
Pvu9g1666 925 MobiDBLite consensus disorder prediction 1 30 - -
Pvu9g1666 925 MobiDBLite consensus disorder prediction 860 925 - -
Pvu9g1666 925 CDD RRM1_MEI2_like 224 299 IPR034453 -
Pvu9g1666 925 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 377 IPR000504 GO:0003723
Pvu9g1666 925 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 291 IPR000504 GO:0003723
Pvu9g1666 925 SUPERFAMILY RNA-binding domain, RBD 223 380 IPR035979 GO:0003676
Pvu9g1666 925 MobiDBLite consensus disorder prediction 675 695 - -
Pvu9g1666 925 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 383 IPR000504 GO:0003723
Pvu9g1666 925 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 298 IPR000504 GO:0003723
Pvu9g1666 925 SMART rrm1_1 226 294 IPR000504 GO:0003723
Pvu9g1666 925 SMART rrm1_1 751 829 IPR000504 GO:0003723
Pvu9g1666 925 SMART rrm1_1 311 379 IPR000504 GO:0003723
Pvu9g1666 925 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 925 - -
Pvu9g1666 925 CDD RRM3_MEI2_like 752 837 IPR034454 -
Pvu9g1666 925 PANTHER RNA RECOGNITION MOTIF-CONTAINING 1 925 - -
Pvu9g1666 925 MobiDBLite consensus disorder prediction 891 925 - -
Pvu9g1666 925 MobiDBLite consensus disorder prediction 675 689 - -
Pvu9g1666 925 Gene3D - 307 402 IPR012677 -
Pvu9g1666 925 SUPERFAMILY RNA-binding domain, RBD 751 836 IPR035979 GO:0003676
Pvu9g1666 925 Gene3D - 204 306 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1666 Pvu-Chr9 23396369 23402117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1666 222 376 Eukaryotic Initiation Factors Gene Family AT3G16380 26.136 3.03e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1666 - - gmx:100797616 1623.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1666 9 23396369 23402117 Pvu9g1666 9 23396369 23402117 ECH
Pvu2g2897 2 44523569 44529595 Pvu9g1666 9 23396369 23402117 PCT