Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1662 ATGGAGAGAAGATCACATTCCACTGAAAGAGAAGAGGAACATGATTTGTTCCCAATATACTCTGAAAGGTCACAGCAAGATATGTCAGCCATGGTGTCTGCCCTCACACAAGTCATGGGTGGCTCCAATGATTCTCTTCAACACCATGAACACCTTTTAACTTCTTCCAACAACACCTCATCCCAGAATAATAATGAACAATCTCAAGTGCCACAACAAGATCAAGGGAGTGGAAGAAGAAGACACTATAGAGGAGTGAGGCAGCGTCCATGGGGAAAATGGGCTGCAGAGATTCGTGATCCGAAGAAGGCAGCGAGGGTATGGCTTGGAACTTTCGACACTGCAGAAGCTGCAGCTCTTGCTTACGATGCAGCTGCTCTCAAATTCAAAGGAAGCAAAGCCAAACTCAATTTCTCTGAGAGGGTTCAAGGTACTGACGAATTTGGTTACCTCACAAATCAACCCCTTTCATCAACCACCACTAGCAATGACCAAGCTTCCAACCCTGTTGCTCCACACTTCACTCAAGAAACTTACTCACCAACTCACTATTACCATCCACAACAAATCATGGGTACTGCTGGAAGTAGCAGCTTCAATAACCAAGATATGCTTCGTTTCTTTGGGGGAGACATGTTTGTTTCTTCTCAGCCAGCTGCATCTTCGTCTTCTTCTACAAGTCTCTCTCAGCAGCAAGAAGAGTTTCTCAGATTTTCGACTCAGTTTGGAGGTTCTTCTTCTGAGCCTCCTAGGAATTGGAGGGGTGATGGATATTGA 777 0.4517 MERRSHSTEREEEHDLFPIYSERSQQDMSAMVSALTQVMGGSNDSLQHHEHLLTSSNNTSSQNNNEQSQVPQQDQGSGRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDAAALKFKGSKAKLNFSERVQGTDEFGYLTNQPLSSTTTSNDQASNPVAPHFTQETYSPTHYYHPQQIMGTAGSSSFNNQDMLRFFGGDMFVSSQPAASSSSSTSLSQQQEEFLRFSTQFGGSSSEPPRNWRGDGY* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1662 258 MobiDBLite consensus disorder prediction 22 76 - -
Pvu9g1662 258 MobiDBLite consensus disorder prediction 1 20 - -
Pvu9g1662 258 MobiDBLite consensus disorder prediction 216 258 - -
Pvu9g1662 258 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Pvu9g1662 258 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Pvu9g1662 258 MobiDBLite consensus disorder prediction 216 248 - -
Pvu9g1662 258 CDD AP2 82 138 IPR001471 GO:0003700|GO:0006355
Pvu9g1662 258 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Pvu9g1662 258 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Pvu9g1662 258 MobiDBLite consensus disorder prediction 154 177 - -
Pvu9g1662 258 MobiDBLite consensus disorder prediction 1 88 - -
Pvu9g1662 258 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 245 - -
Pvu9g1662 258 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Pvu9g1662 258 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Pvu9g1662 258 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Pvu9g1662 258 PANTHER DNA-BINDING DOMAIN 19 245 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1662 Pvu-Chr9 23312039 23314113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1662 15 154 AP2-EREBP Transcription Factor Family AT5G61890 64.828 5.75e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu9g1662 AP2 4.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1662 - - gmx:100799190 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1662 9 23312039 23314113 Pvu9g1662 9 23312039 23314113 ECH
Pvu1g0867 1 14986698 14988815 Pvu9g1662 9 23312039 23314113 ECH
Pvu2g2891 2 44487105 44490185 Pvu9g1662 9 23312039 23314113 ECH
Pvu9g1662 9 23312039 23314113 Pvu1g0867 1 14986698 14988815 ECH
Pvu2g2891 2 44487105 44490185 Pvu9g1662 9 23312039 23314113 PCT