Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1626 ATGCCGCTTTTGAGGAGAAAGCCTTTTGCCCTGGCTGAGCCACCTAATGATTGGGAGCCATGCGAGAGTCTTTTTCAAATTAGATTTACTAAAGAAATATTTCGAGATTATAATGATTATTTGAACCGTTTAAATCAATACCGCCAGAGGGTTTGGACGTGCAAAGTAACTGGTAAAACTGGCTTGACTTATGAAGAGGCTCTGGTGTCAGAGATGCATGCCACTGAGAAAGTTCAACAGATTCCGGAAGAATTAAAGGCACCTGCACTTAGGATTATTCAGTACAGCATGCTCCCATTGAAGGATCTTGTTGATTCTATTGCTGAAAAGTTGAAGGAGCAGTTGTTTGTGGGCTCTCAATTGTATGGAAAGAAAAATGACAGGGTGTGTCCTTGCAAAATATTGAAAGTGATGCAGGAAGATGCTGAAAATATCAGCTATGTGGTGGCTTGGCTTGATGAGAGCAATAATGTTATTGAAAGAGCAGAAGTCAGTTCTCAAGATTTGGTGCAGAAGAAACGACCTTTTAGTATAAATATTTTGAAGTCTTTTGTCCGTGGATGTACATATCGAAATGCTCCTTGGGTTTTACACGATAAACTTGCAAAAAAACATGGTATCTCAACTGACATTCCAGAGGAGTTAAGAGGAAAGGTTTCCTTTAACAATGGACTTGTGGTCTTCACCAAAACAAGAAAGAATGAGGAAGAGTCAATCCAATATCCAATTGATGATCTATTAGTGAAGCCTAGTCCAGATGATCCTGTTTTCAGTAGTCGTCCTTCTCCATCAAGAGACTTTAATGTTCCTATTTATTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTTTATGTCGTTTGGTAAACTGTTACGATTGTCTCCTTACTCTCTCAAAGATTTTGAAAAAGCAATCAGTCACAAGGATAGCAATGTAGCTCTCCTGGTGGAATCTCATGCAGTACTCTTTCGAGTGCTCATCAAAGGTGATGATGAATACTATGCAGCTGTTCAAGACAAATTACCGAAGAAGATTACAATGATTAGTTGGAAAGAGTATTTATGTGAGTTTTTAGAAATGATCAAAATTCCCAAGCTGCGGCAGTATGAAGCAACAATTAAACGGGGACATTATGGTTATGTTGATGTCAATGCTAAATTAGAAATCTTTAGCGAATTAGTCAATCGAGCCCTTGGTACTGCTATTGTCAGGGAAAAATTGGATGAGTATATTATACAAAGGCGGGTACTGGGGGCTGCTAAAAGGGAAGAAGCTATTGAAGCTTCTGCGAAGAGAAGAAAAGTAAAGGAGCAGTTGAAAGCTGATTCTGGAAGCAACTGTGGTGAGAATTGGCGTCATCTTGATCAGGATACAACTGTGTCAACAGATAATAATAATAACAGTAACAGAATACAGAATGGTAGTATTGGAAAGAATAGAAACAAAGAGATAGAATCATCTTGGCAAAAAGATGCATGGGATAGTGGTATCAAGCATTCAAATCTTGCTTCAAAAATGTCAGCTGAAGAGCTGAATCAATCTGCAGAATTCAGAAAAGTATACAGAAAGGAATCACTGAAACAACCAAAGGGTGATAAGGATCAATCAGAGAAAAACTACGAACAAAGGAGAGAATATTTTGATCGGGAGATAGAGAAATGGTGTATTCGTACAAGTTTCCTAGGTATGGACAGATATTATAATAGGTATTGGTGGTTTTACCGTGATGGAAGGATATTTGTTGAAAGTCCTGAATCCAAGGAGTGGGGATACTACAGTAGCAAGGGAGAGCTTGATGGATTGACGACTTCACTGAATTGCAAAGGTGAGAGGGAAAGGGCACTGCTAAAACAACTGAACAAATATTATAGTAGAATATGCTCAGAATTGCAGAAAAATTCAAAGGATTTGTTGCATAATATTGCCCTGGATGATTCTGTGGTGAGAAGGTCTACTCGTGTTCGCGCACCACCTAGGAAGAATCCTGCCAAAGCTTTCCTTAGATATGTAAACAAGTGGAAAGAAGAGTAA 2031 0.387 MPLLRRKPFALAEPPNDWEPCESLFQIRFTKEIFRDYNDYLNRLNQYRQRVWTCKVTGKTGLTYEEALVSEMHATEKVQQIPEELKAPALRIIQYSMLPLKDLVDSIAEKLKEQLFVGSQLYGKKNDRVCPCKILKVMQEDAENISYVVAWLDESNNVIERAEVSSQDLVQKKRPFSINILKSFVRGCTYRNAPWVLHDKLAKKHGISTDIPEELRGKVSFNNGLVVFTKTRKNEEESIQYPIDDLLVKPSPDDPVFSSRPSPSRDFNVPIYCVGDLLMVWDFFMSFGKLLRLSPYSLKDFEKAISHKDSNVALLVESHAVLFRVLIKGDDEYYAAVQDKLPKKITMISWKEYLCEFLEMIKIPKLRQYEATIKRGHYGYVDVNAKLEIFSELVNRALGTAIVREKLDEYIIQRRVLGAAKREEAIEASAKRRKVKEQLKADSGSNCGENWRHLDQDTTVSTDNNNNSNRIQNGSIGKNRNKEIESSWQKDAWDSGIKHSNLASKMSAEELNQSAEFRKVYRKESLKQPKGDKDQSEKNYEQRREYFDREIEKWCIRTSFLGMDRYYNRYWWFYRDGRIFVESPESKEWGYYSSKGELDGLTTSLNCKGERERALLKQLNKYYSRICSELQKNSKDLLHNIALDDSVVRRSTRVRAPPRKNPAKAFLRYVNKWKEE* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1626 676 MobiDBLite consensus disorder prediction 431 481 - -
Pvu9g1626 676 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 556 622 IPR028941 -
Pvu9g1626 676 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Pvu9g1626 676 ProSiteProfiles WAC domain profile. 22 128 IPR013136 -
Pvu9g1626 676 ProSiteProfiles DDT domain profile. 271 332 IPR018501 -
Pvu9g1626 676 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 237 - -
Pvu9g1626 676 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 231 674 - -
Pvu9g1626 676 SMART testlast3 271 332 IPR018501 -
Pvu9g1626 676 Pfam DDT domain 273 328 IPR018501 -
Pvu9g1626 676 MobiDBLite consensus disorder prediction 443 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1626 Pvu-Chr9 22868551 22874157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1626 273 328 Homeobox Transcription Factor Family AT1G28420 44.643 2.75e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pvu9g1626 WAC_Acf1_DNA_bd 1.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1626 - - gmx:100784607 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1626 9 22868551 22874157 Pvu9g1626 9 22868551 22874157 ECH
Pvu2g2856 2 44177945 44184004 Pvu9g1626 9 22868551 22874157 PCT