Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1623 ATGGCCGCAGAAATTTGTGGCGCGTCTCTATTCTTATCCGTTAAAACTCAACTGCAACAACCACACCACCACCAACGCGCGCTCTTCCATGCTCAACGAAGCAGAACAAGAAGAACCACTACCAGATTCCACTCATCCAAACGCTGCCTTAGTTCCGTCTTTCCAAATGCTTCCACGTTTCGCTCCGGCGTTTTGTGCCAGGTCGCCAGCACCGACTTCGACTCCGCCGCCAAAGCCGGCGAACACCGTCTCTCTAAGGTGCCGGTGCGTAATATAAGGAACTTCTCCATCATTGCGCATATTGACCACGGGAAATCGACGTTGGCGGATAAGTTGCTTCAGGTTACTGGCACGGTGCAACAGCGAGACATGAAGGATCAGTTTCTCGATAACATGGACTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGGCAGCTCGAATGCGTTATGTTTTTGAAAATGAACCTTATTGCTTGAATCTAATCGATACACCAGGTCATGTCGACTTCTCCTATGAGGTTTCCCGGTCACTTGCTGCATGTGAGGGTGCTCTTCTAGTAGTAGATGCTTCTCAGGGTGTTGAAGCACAAACCCTAGCTAATGTTTATTTGGCTTTGGAGAACAACCTAGAAATCATCCCTGTTTTGAACAAAATAGATCTCCCAGGTGCAGAACCAGATCGAGTTATCAAGGAGATTGAAGAGATTGTAGGTCTAGATTGCAGCAATGCGATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATTGATATTCTCAATGCGATTGTTGCAAGAATTCCCCCACCTGAAGATACATCTAAAAGACCGTTGAGGGCTTTAATATTTGACAGCTACTATGATCCATACAGAGGTGTTATTGTATACTTCCGAATTGTAGATGGGTCTATAAAGAAAGGTGATAGAGTTTATTTCATGGCTAGTGGGAAGGATTACTTTGCTGATGAAATTGGAGTTTTGTCTCCCAATCAACTACAAGTTGAAGAACTGTATGCTGGTGAGGTGGGCTATCTCTCTGCATCAATAAGAACAGTAGCTGATGCTAGAGTGGGTGACACTATTACTCACTATGGCAGAAAGGCTGATAAGTCACTCCCTGGATACGAGGAAGCCACTCCTATGGTGTTCTGTGGCTTGTTTCCTGTTGATGCTGACCAATTCCCTGATCTGCGTGATGCACTTGAGAAGCTACAACTCAATGATGCTGCACTAAAGTTTGAACCTGAGACCTCGAGTGCCATGGGATTTGGCTTTAGATGTGGGTTTCTGGGTCTTCTTCATATGGAAATTGTCCAGGAGAGACTTGAGAGAGAATACAACTTGAGCTTGATAACAACTGCTCCTAGTGTTGTGTACAGAGTAAACTGTGTAAATGGTGATACTGTTGAATGCTCCAACCCATCATTACTTCCTGAGCCTGGAAAAAGGAAATCAATTGAGGAGCCATTTGTTAAGATTGAGATGCTTACACCAAAAGACTACATTGGTTCACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTTAAAGAAATGAAATTTATTGCTGAAAATAGGGCATCACTTGTCTATGAATTACCATTAGCAGAGATGGTTGGTGATTTCTTTGATCAGTTGAAGTCAAGAAGTAAGGGTTATGCTAGTATGGAGTATACGTTTGTTGGGTACGTCGAAAATAATTTAATTAAACTTGACATACGGATAAATGGTGACTGTGTGGAGCCATTGGCCACAATTGTGCACAATGATAAGGCGTATTCTGTGGGAAGGGCTTTGACTCTGAAGTTGAAGGAGCTCATACCACGACAAATGTTTAAAGTACCAATTCAAGCATGTATAGGATCAAAAGTGATTGCCAGTGAAGCGATATCTGCAATAAGGAAGGATGTACTAGCCAAATGCTACGGTGGGGATATTTCAAGAAAAAAGAAATTGCTTAAGAAACAGGCTGAAGGAAAGAAAAGGATGAAGTCTATTGGTAAAGTTGATGTTCCCCAAGAAGCTTTCATGGCAGTTTTGAAACTTGAAAAGGAGGTAATATGA 2064 0.4297 MAAEICGASLFLSVKTQLQQPHHHQRALFHAQRSRTRRTTTRFHSSKRCLSSVFPNASTFRSGVLCQVASTDFDSAAKAGEHRLSKVPVRNIRNFSIIAHIDHGKSTLADKLLQVTGTVQQRDMKDQFLDNMDLERERGITIKLQAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPDRVIKEIEEIVGLDCSNAILCSAKEGIGIIDILNAIVARIPPPEDTSKRPLRALIFDSYYDPYRGVIVYFRIVDGSIKKGDRVYFMASGKDYFADEIGVLSPNQLQVEELYAGEVGYLSASIRTVADARVGDTITHYGRKADKSLPGYEEATPMVFCGLFPVDADQFPDLRDALEKLQLNDAALKFEPETSSAMGFGFRCGFLGLLHMEIVQERLEREYNLSLITTAPSVVYRVNCVNGDTVECSNPSLLPEPGKRKSIEEPFVKIEMLTPKDYIGSLMELAQERRGQFKEMKFIAENRASLVYELPLAEMVGDFFDQLKSRSKGYASMEYTFVGYVENNLIKLDIRINGDCVEPLATIVHNDKAYSVGRALTLKLKELIPRQMFKVPIQACIGSKVIASEAISAIRKDVLAKCYGGDISRKKKLLKKQAEGKKRMKSIGKVDVPQEAFMAVLKLEKEVI* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1623 687 CDD LepA 93 270 - -
Pvu9g1623 687 PRINTS GTP-binding elongation factor signature 94 107 IPR000795 GO:0003924|GO:0005525
Pvu9g1623 687 PRINTS GTP-binding elongation factor signature 137 145 IPR000795 GO:0003924|GO:0005525
Pvu9g1623 687 PRINTS GTP-binding elongation factor signature 161 171 IPR000795 GO:0003924|GO:0005525
Pvu9g1623 687 PRINTS GTP-binding elongation factor signature 177 188 IPR000795 GO:0003924|GO:0005525
Pvu9g1623 687 PRINTS GTP-binding elongation factor signature 213 222 IPR000795 GO:0003924|GO:0005525
Pvu9g1623 687 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 90 271 IPR000795 GO:0003924|GO:0005525
Pvu9g1623 687 SUPERFAMILY EF-G C-terminal domain-like 379 457 IPR035647 -
Pvu9g1623 687 CDD EF4_II 278 363 - -
Pvu9g1623 687 SMART EFG_C_a 485 573 IPR000640 -
Pvu9g1623 687 Pfam GTP-binding protein LepA C-terminus 575 681 IPR013842 -
Pvu9g1623 687 Gene3D Elongation Factor G (Translational Gtpase), domain 3 373 454 - -
Pvu9g1623 687 Pfam Elongation factor Tu domain 2 292 362 IPR004161 GO:0005525
Pvu9g1623 687 Pfam Elongation factor G C-terminus 486 567 IPR000640 -
Pvu9g1623 687 Pfam Elongation factor Tu GTP binding domain 91 268 IPR000795 GO:0003924|GO:0005525
Pvu9g1623 687 SUPERFAMILY Translation proteins 252 374 IPR009000 -
Pvu9g1623 687 TIGRFAM small_GTP: small GTP-binding protein domain 93 262 IPR005225 GO:0005525
Pvu9g1623 687 PANTHER TRANSLATION FACTOR GUF1-RELATED 80 681 IPR006297 GO:0005525
Pvu9g1623 687 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 80 681 - -
Pvu9g1623 687 Hamap Translation factor GUF1 homolog, organellar chromatophore [lepA]. 84 684 IPR027518 -
Pvu9g1623 687 CDD EF4_III 380 455 - -
Pvu9g1623 687 Gene3D - 89 272 IPR027417 -
Pvu9g1623 687 SUPERFAMILY EF-G C-terminal domain-like 486 580 IPR035647 -
Pvu9g1623 687 Hamap Elongation factor 4 [lepA]. 87 685 IPR006297 GO:0005525
Pvu9g1623 687 Gene3D Translation factors 273 372 - -
Pvu9g1623 687 Gene3D - 567 641 IPR038363 -
Pvu9g1623 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 288 IPR027417 -
Pvu9g1623 687 Gene3D - 455 565 - -
Pvu9g1623 687 CDD lepA_C 488 567 IPR035654 -
Pvu9g1623 687 TIGRFAM lepA: elongation factor 4 91 682 IPR006297 GO:0005525
Pvu9g1623 687 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 130 145 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1623 Pvu-Chr9 22820718 22834865 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1623 90 325 Eukaryotic Initiation Factors Gene Family AT3G22980 33.333 1.24e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1623 K21594 - gmx:100784073 1258.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1623 9 22820718 22834865 Pvu9g1623 9 22820718 22834865 ECH