Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1618 ATGAAGGAAGCCCAAATTGAAATTACCATTCCTCACCTGTTCAGATGCCCCATCAGTTTGGACTTGTTCGAAGATCCAGTAACTTTGTCCACCGGCCAAACCTATGACAGATCGAGCATAGAGAAATGGTTCTCTGCTGGAAATCTCACATGCCCTGTAACAATGCAGAAGCTTCATGATGCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTCCAATTGGGTCCCCAATTTGGTAACTGTGCTACTATTGATCATCTAGCCGCACTAAAGCATTCCCTTGAATCTCCCGAATTGGAAAACAAGCTCCAAGCACTTGAGAAAATTAGAGTTCTCTCTGATGAGTATTGCTCCTTCAGAAAATCTTTTTTCCATCAACTGAGTTTCTTGCCCCTACTTTTGGAACTTGTTTTTGGAACTGAGTTCACAAAATGTCACACCAAGTTCACGGAGCTAGCACTTTGTTGCATTATAAAGTTGTTACCTCTTGTGAGTTTGGAGGCTCTAAATATGATCAAAGATGAGTCTAAGTTAGCAACGTTCTTACTACTATTTGAAAAGGGAACTAGCTCGGTTAAGACCAGTCTTTGTCATCTTATAGATTCTACAGCATCACCCCAAACAGAAGAGGTATGTCACATGCTTGGACACTCTCAAAATTTACTGCGTGAAATTGTCGTACTTGTTCGTCAAGGTTCTGAGGTTTCTAAGGTTGCAATTAAGGCCATGTTATCATTATGTTCCTTGCAATCTAACCGAGACAATTTGGTGAGGGCAGGAGCAATTGATGGGGTCATAATATACATTTCAGGTTGTGAAACAAGGCAGAAGAACTTGGCTCCATTTGCGATGGCAATAATAAAGAACCTTCTGGTGCTAGAGAGTGCTAAAGAGGCACTGGTGAATCACCCTTATGGGGTTGCAACTTTGGTGAAGTTGGTTTTCAAAGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGATACTTGCAATCGTTTGCCGTGATTTTGGGCGAGCAAGAGAGGAAGCAATCGGTGCTGGAGTTTTGACTCAGTTGCTGTTTCTTCTCCAGAGTCAGTGTGACCCCAAAACTAAAACAAAAGCAAGAATGCTGCTCAAGTTGCTAAGATCAAAGTGGATTGAGGAACCAAAACAGGTGTAG 1179 0.4249 MKEAQIEITIPHLFRCPISLDLFEDPVTLSTGQTYDRSSIEKWFSAGNLTCPVTMQKLHDASIVPNHTLRHLIDQWLQLGPQFGNCATIDHLAALKHSLESPELENKLQALEKIRVLSDEYCSFRKSFFHQLSFLPLLLELVFGTEFTKCHTKFTELALCCIIKLLPLVSLEALNMIKDESKLATFLLLFEKGTSSVKTSLCHLIDSTASPQTEEVCHMLGHSQNLLREIVVLVRQGSEVSKVAIKAMLSLCSLQSNRDNLVRAGAIDGVIIYISGCETRQKNLAPFAMAIIKNLLVLESAKEALVNHPYGVATLVKLVFKVCNQECSESAVGILAIVCRDFGRAREEAIGAGVLTQLLFLLQSQCDPKTKTKARMLLKLLRSKWIEEPKQV* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1618 392 Gene3D - 85 383 IPR011989 -
Pvu9g1618 392 PANTHER WDSAM1 PROTEIN 9 384 IPR045185 GO:0061630
Pvu9g1618 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Pvu9g1618 392 SUPERFAMILY ARM repeat 226 381 IPR016024 -
Pvu9g1618 392 SUPERFAMILY RING/U-box 6 78 - -
Pvu9g1618 392 CDD RING-Ubox_PUB 14 56 IPR045210 -
Pvu9g1618 392 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Pvu9g1618 392 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Pvu9g1618 392 PANTHER OS02G0542800 PROTEIN 9 384 - -
Pvu9g1618 392 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1618 Pvu-Chr9 22740302 22741480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1618 5 388 U-box Gene Family AT1G49780 28.889 2.89e-42 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1618 - - gmx:100819468 665.225