Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1607 ATGGAAGATGAAAGCCACACCAATCTCCCAAACGCCTTCATCACAGCAAGCCCTGAAAGCCCTTCCTTAAAGCCATCCAATAACACCACCACCACCACTAACCACCATCACAACAACAACAACAAAGAACAAGATCGCTTTCTCCCTATCGCCAACGTCGGAAGAATAATGAAAAAGGCCATCCCTGGCAATGGCAAAATCTCAAAGGATGCAAAGGAAACAGTTCAAGAGTGTGTCTCTGAGTTCATCAGCTTTGTCACAGGCGAAGCCTCGGACAAATGCCAGAGGGAAAAGAGAAAGACCATCAATGGAGATGACATCATTTGGGCCATCACAACCCTGGGATTTGAGGACTATGTCGACCCTCTAAAATCCTATCTCCAAAAATATAAAGAGATCGAAGGAGAGAAGCTTAACATTCCTAAGCGACAACGTTCTGAACAAAGGCTTCATCATCAACACCAAAATCCCCACCAAGATCAAAATAATAACAACAACAATCTAAGTAGTAGTGTATATTCCTCTCCAACTCTTCTTTCTCAGCCATCTTACGTACCCACGGATCAACTGTTTTCCCTACCATTCTCCCCAAATTCCCTTCAGAAACAGTTACAGCCGCAAGACCAGATCGATTCTGTGGGGCAATGGTAA 651 0.4424 MEDESHTNLPNAFITASPESPSLKPSNNTTTTTNHHHNNNNKEQDRFLPIANVGRIMKKAIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYKEIEGEKLNIPKRQRSEQRLHHQHQNPHQDQNNNNNNLSSSVYSSPTLLSQPSYVPTDQLFSLPFSPNSLQKQLQPQDQIDSVGQW* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1607 216 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 111 IPR003958 -
Pvu9g1607 216 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Pvu9g1607 216 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Pvu9g1607 216 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Pvu9g1607 216 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 206 - -
Pvu9g1607 216 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 206 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pvu9g1607 216 ProSitePatterns NF-YB/HAP3 subunit signature. 78 94 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pvu9g1607 216 MobiDBLite consensus disorder prediction 138 173 - -
Pvu9g1607 216 MobiDBLite consensus disorder prediction 8 37 - -
Pvu9g1607 216 MobiDBLite consensus disorder prediction 1 44 - -
Pvu9g1607 216 MobiDBLite consensus disorder prediction 157 173 - -
Pvu9g1607 216 Gene3D Histone, subunit A 33 171 IPR009072 GO:0046982
Pvu9g1607 216 MobiDBLite consensus disorder prediction 138 156 - -
Pvu9g1607 216 SUPERFAMILY Histone-fold 44 162 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1607 Pvu-Chr9 22629302 22629952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1607 42 213 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.591 4.85e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu9g1607 CBFD_NFYB_HMF 6.5e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1607 K08065 - gmx:100778216 301.597