Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1604 ATGAGCGCCTCCCGAAAGCGCGCGGCGGCGCCGCCGAAACCTCCGCCGTCGAAGCAAGCCTTATTGACTCAGGAAGAGGACATGGACGAAGACGTGTTTATGGAGCAAACCCTCATTTCTGAAGACGAAGAGTCCATGATTCTCCGCGACATCGAGCAGCGCCAGGCCCTCGCTGCTCGCCTATCCAAGTGGGCGCGTCCTCCACTATCGGCCGATTACGTCAAACAAGTCGTTTTTCAGCAGCTGGAGATTGATTACGTGATCGGGGAGAGTCACAGGGAGTTGCTGCCGAACTTGTCTGGACCTGCTGCCATTATCAGAATCTTTGGAGTTACGAAGGAAGGACACAGTGTTTGCTGCAATGTTCATGGGTTTGAACCATATTTCTACATCTGTTGCCCTCCTGGAATGGGTCCAGATGATATCTCTCATTTTCACCAAACACTTGAGGGAAGGATGAGAGAAGCCAATAGAAATAGTAATGTAGGAAAATTCGTTCGCCGCATTGAAATGGTGCAGAGGAGAAGTATTAAGTACTATCAGCAATCTGATTCCCAGTCCTTTCTCAAAATTGTAGTTGCACTCCCAACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGGGGTATTCAGCTTGATGGTCTGGGAATGAAGAGCTTCTGGACTTATGAAAGCAATGTACTTTTTGCCCTACGGTTCATGATTGATTGCAACATAGTAGGTGGAAATTGGATTGAAATTCCAGCAGGAAAATATAAGAAGATAGCGAAAAGCTTGTCTTATTGCCAGTTGGAGTTTGATTGCCTGTATTCTGATTTGATTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCCGAGCCTAGCCATGATCCTGTTATCCAGATTGCTAATTTGGTTACTTTACAAGGAGAGGACCAGCCACTTATTCGTAATGTGATGACCCTTAAATCATGCTCTCCTATTGTTGGTGTTGATGTGATGTCATTTGATACGGAAAGAGAAGTCCTGCTAGCTTGGAGGGATTTAATTCTGGAAGTGGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACCTGCCATATCTTATTGAGAGAGCTGCAAACCTGAAGATAGCAGAATTTCCTATTCTTGGCCGTATTAGGAACAGTAGAGTTCGGGTAAAGGATACAACTTTCTCGTCAAGGCAGTACGGGACCAGGGAAAGCAAAGAAGTTGCAGTAGAAGGGAGAGTTCAGTTTGACTTACTCCAGGTTATGCAGAGAGACTACAAATTAAGTTCGTATTCACTAAATTCTGTCTCAGCACACTTCCTTTCTGAGCAGAAAGAGGATGTCCATCATTCTATCATATCTGAACTTCAGAATGGAACCCCAGAAACTAGGAGGCGTCTTGCTGTGTATTGTTTGAAGGATGCATACCTCCCTCAGCGACTTTTGGATAAATTGATGCTCATTTACAACTATGTGGAGATGGCTCGAGTAACAGGTGTTCCAATTTCTTTTCTACTTTCCAGAGGCCAAAGCATTAAGGTACTTTCACAACTTCTTAGGAAGGCAAGACAGAAGAATCTGGTCATTCCTAGTGTCAAACAGGTCGGGTCTGAACAAGGAACATTCGAAGGTGCCACTGTATTGGAGGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACGTTAGATTTTGCATCCCTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACACTGGTGACTTCTGAAGATGCTCGCAAGCTGAACATCCCTCCGGAGTCCGTGAACAGAACTCCATCTGGTGAAACATTTGTTAAAGCAAATCTGCAGAAGGGAATACTTCCTGAAATACTTGAAGAGCTATTAACAGCCCGAAAAAGGGCAAAAGCAGACTTAAAGGAGGCGAGGGATCCCCTGGAGAGGGCAGTACTAGATGGTAGGCAGCTGGCCCTGAAAATTAGTGCAAATTCTGTGTATGGGTTTACTGGGGCTACCATTGGTCAGTTACCATGTTTGGAGATATCATCGAGTGTAACAAGCTATGGTCGACAAATGATTGAGCACACAAAAAAACTTGTGGGAGATAAATTTACGACACTTAATGGCTATGAGCACAATGTTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTGTTTCTTCTGTAGAACAGGCTATGAACTTGGGGAGAGAAGCTGCCGAATATATAAGTGGAACTTTCACAAAACCCATCAAACTAGAATTTGAGAAGGTTTATTATCCATATCTATTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGTTTGTTGGTAAAAAACCTGGTGAATGATTGTCTTCACAAAATACTGATTGACAGGGACATTCCGGGGGCTGTCCAGTATGTCAAGAACGCAATTTCAGATCTTCTCATGAATCGGATGGATTTATCTCTGCTGGTTATTACAAAGGGTTTAACAAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGAGATAGAGTACCTTATGTAATTATCAAAGCTGCAAAAGGTGCAAAGGCGTATGAGAAATCAGAGGACCCTATTTATGTTCTAGAGAACAACATTCCTATAGATCCTCAATACTATCTTGAGAATCAAATTAGCAAGCCGATTCTGAGAATTTTTGAGCCAATTCTGAAGAATGCTAGCAGAGAACTTCTCCATGGAGATCATACAAGATCTATTTCAATTTCTACTCCGTCAAACATTGGCTTATTGAAATATGCTAAGAGAAACCTTACCTGCATTGGCTGTAAAGCTGTACTAGGCAAGGATCTTCACACAGTCTGTTCACATTGCAAAGGAAGGGAAGCTGAGCTATACTGTAAAACAGTATCTCAAGTGTCTGAGTTGGAGAAGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAAGATGTTCTCTGCACCAGTCGGGATTGTCCAATTTTTTATCGACGAAAAAAGGCACAAAAAGATATGTCCGAAGCAAAATCGCAATTGGACCGGTGGAGTTTTTAA 3240 0.4265 MSASRKRAAAPPKPPPSKQALLTQEEDMDEDVFMEQTLISEDEESMILRDIEQRQALAARLSKWARPPLSADYVKQVVFQQLEIDYVIGESHRELLPNLSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYICCPPGMGPDDISHFHQTLEGRMREANRNSNVGKFVRRIEMVQRRSIKYYQQSDSQSFLKIVVALPTMVASCRGILDRGIQLDGLGMKSFWTYESNVLFALRFMIDCNIVGGNWIEIPAGKYKKIAKSLSYCQLEFDCLYSDLISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPSHDPVIQIANLVTLQGEDQPLIRNVMTLKSCSPIVGVDVMSFDTEREVLLAWRDLILEVDPDIIIGYNICKFDLPYLIERAANLKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVAVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISELQNGTPETRRRLAVYCLKDAYLPQRLLDKLMLIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKARQKNLVIPSVKQVGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTSEDARKLNIPPESVNRTPSGETFVKANLQKGILPEILEELLTARKRAKADLKEARDPLERAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVGDKFTTLNGYEHNVEVIYGDTDSVMVQFGVSSVEQAMNLGREAAEYISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASRELLHGDHTRSISISTPSNIGLLKYAKRNLTCIGCKAVLGKDLHTVCSHCKGREAELYCKTVSQVSELEKLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMSEAKSQLDRWSF* 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1604 1079 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 75 1078 - -
Pvu9g1604 1079 Pfam DNA polymerase family B 519 952 IPR006134 GO:0000166|GO:0003677
Pvu9g1604 1079 SMART polmehr3 286 745 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pvu9g1604 1079 Pfam DNA polymerase family B, exonuclease domain 112 455 IPR006133 -
Pvu9g1604 1079 ProSitePatterns DNA polymerase family B signature. 733 741 IPR017964 GO:0000166|GO:0003676
Pvu9g1604 1079 SUPERFAMILY DNA/RNA polymerases 545 955 IPR043502 -
Pvu9g1604 1079 PRINTS DNA-directed DNA-polymerase family B signature 578 591 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pvu9g1604 1079 PRINTS DNA-directed DNA-polymerase family B signature 670 682 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pvu9g1604 1079 PRINTS DNA-directed DNA-polymerase family B signature 731 739 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pvu9g1604 1079 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 75 1078 - -
Pvu9g1604 1079 Gene3D - 807 962 IPR042087 -
Pvu9g1604 1079 SUPERFAMILY Ribonuclease H-like 103 525 IPR012337 -
Pvu9g1604 1079 MobiDBLite consensus disorder prediction 1 26 - -
Pvu9g1604 1079 Pfam C4-type zinc-finger of DNA polymerase delta 989 1060 IPR025687 -
Pvu9g1604 1079 Gene3D DNA Polymerase, chain B, domain 1 82 257 - -
Pvu9g1604 1079 Gene3D Helix hairpin bin 634 686 - -
Pvu9g1604 1079 Gene3D Palm domain of DNA polymerase 561 790 IPR023211 -
Pvu9g1604 1079 Gene3D - 287 505 IPR036397 GO:0003676
Pvu9g1604 1079 TIGRFAM pol2: DNA polymerase (pol2) 341 950 - -
Pvu9g1604 1079 CDD POLBc_delta 560 953 - -
Pvu9g1604 1079 CDD DNA_polB_delta_exo 282 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1604 Pvu-Chr9 22552261 22566378 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1604 3 1079 Core DNA Replication Machinery Family AT5G63960 79.709 0.0 1836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1604 K02327 - gmx:100817379 2010.73