Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1596 ATGTCTGGGAAGGCGAAGAGGAGAGACGAAGACGGTGCTTCCGATGCTGACTCTGAAGGCCACGCGCCGCCCAAAAAGACACTAAAGAGAGATTCCGACGACGAATCTGACTCTATTGTCGTCTGCGAGATTTCCAAGAACAGGAGGGTTTCTGTGAGGAACTGGCAAGGCAGGATTGTAGTTGACATTCGCGAGTTTTACCTCAAGGATGGCAAGAAAATGCCTGGCAAGAAAGGTATCTCATTGACTATGGATCAGTGGAATGTGCTGCGCACTCATGTTGAAGAAATTGACAAAGCAGTCAGTGAGAATTCTTAG 318 0.4811 MSGKAKRRDEDGASDADSEGHAPPKKTLKRDSDDESDSIVVCEISKNRRVSVRNWQGRIVVDIREFYLKDGKKMPGKKGISLTMDQWNVLRTHVEEIDKAVSENS* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1596 105 Pfam Transcriptional Coactivator p15 (PC4) 42 92 IPR003173 GO:0003677|GO:0006355
Pvu9g1596 105 MobiDBLite consensus disorder prediction 1 38 - -
Pvu9g1596 105 PANTHER BNAC09G47220D PROTEIN 1 103 - -
Pvu9g1596 105 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 1 103 IPR045125 GO:0003713|GO:0060261
Pvu9g1596 105 SUPERFAMILY ssDNA-binding transcriptional regulator domain 41 102 IPR009044 GO:0003677|GO:0006355
Pvu9g1596 105 Gene3D Transcriptional Coactivator Pc4; Chain A 29 105 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1596 Pvu-Chr9 22412828 22415250 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Pvu9g1596 PC4 1.8e-24 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1596 K25815 - gmx:100499936 187.193