Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1560 ATGGGAAGAGCTAGCAGCAGCAACAGTGGTGAGAGTAAAAAGGGCTGCAGTAGAGGACATTGGAGACCCTCCGAAGATGAGACACTTAAGAAACTTGTGAAGCAATATGGTCCCCAAAACTGGAACTTTATTTCAGAATATCTAGAACGAAGATCAGGGAAAAGTTGTAGATTGAGATGGTACAATCAGCTAGACCCAAACATCATCAAAAAGCCATTCACCGAAGAGGATGAAGAAAGACTCCTAGCACTGCATAAAGTGAAGGGAAACAAATGGGCTGCAATAGCCAGATTCTTCCCTGGAAAAACTGACAATGCTGTCAAGAATCAGTTCCATGTATTAATGGCCAGAAGGAAGAGGGAGCGTTTGGCACTGTCTGGTGACACATTTGGTCATAATCCTCTAATTAATCTTAATAACATGCAAAACTACAAAAACAAGGGAATGTTTGCCACGTATGTCTCACAGAAACCAACTCTTTGGAGTACATTGGGTGCATCTTCAACCATCACATCATGTTTTGGTATTTCTAGTGTGGTTCACAGAGACTCAAACGTGTCTTCAAGTGCTAGAGAGAAAGCATTGTTTGATTTGGACCATTTTTCTTGTCGTAGTCCTCCAACTGTTGGTTCTTCTATTCTTGGCAGTTACTACAGTTTCACTGCCCCAGGACTTCCTAGTGTTGGCAAGGTTGTTCCCCTTCCACACAAATTTTCAAACTATAGTTATGACCACAGACCTATAGACTCTAACAAAAGTTGCAAAACAATTAAACATGCACGTGATAGCTCCTCCACATTATGCAAGTTCAGTACCACTCTTGAGCCTCTTAATCTCAAGCAAAAGGGTGTTTCCTTCATAGATTTTCTCGGAGTGGGAAGTTCTCCTAATCATCGTCACAATTCACACCATAACGTGCTTTAA 924 0.4145 MGRASSSNSGESKKGCSRGHWRPSEDETLKKLVKQYGPQNWNFISEYLERRSGKSCRLRWYNQLDPNIIKKPFTEEDEERLLALHKVKGNKWAAIARFFPGKTDNAVKNQFHVLMARRKRERLALSGDTFGHNPLINLNNMQNYKNKGMFATYVSQKPTLWSTLGASSTITSCFGISSVVHRDSNVSSSAREKALFDLDHFSCRSPPTVGSSILGSYYSFTAPGLPSVGKVVPLPHKFSNYSYDHRPIDSNKSCKTIKHARDSSSTLCKFSTTLEPLNLKQKGVSFIDFLGVGSSPNHRHNSHHNVL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1560 307 CDD SANT 21 62 IPR001005 -
Pvu9g1560 307 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Pvu9g1560 307 CDD SANT 72 115 IPR001005 -
Pvu9g1560 307 MobiDBLite consensus disorder prediction 1 23 - -
Pvu9g1560 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 68 IPR017930 -
Pvu9g1560 307 PANTHER MYB PROTEIN-RELATED 7 294 - -
Pvu9g1560 307 PANTHER MYB TRANSCRIPTION FACTOR 7 294 - -
Pvu9g1560 307 SMART sant 17 66 IPR001005 -
Pvu9g1560 307 SMART sant 69 117 IPR001005 -
Pvu9g1560 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 119 IPR017930 -
Pvu9g1560 307 Gene3D - 18 69 - -
Pvu9g1560 307 SUPERFAMILY Homeodomain-like 17 111 IPR009057 -
Pvu9g1560 307 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Pvu9g1560 307 Pfam Myb-like DNA-binding domain 21 81 - -
Pvu9g1560 307 Gene3D - 71 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1560 Pvu-Chr9 21966880 21967940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1560 1 124 MYB Transcription Factor Family AT4G33450 68.800 3.26e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu9g1560 Myb_DNA-bind_6 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1560 K09422 - qsu:112030667 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1560 9 21966880 21967940 Pvu9g1560 9 21966880 21967940 ECH