Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1541 ATGGATACCAACCTAAACACTACATTCACCAACGTTAACACCACTTACAATCACCAGACCATGCCCACAGATCAACATAACATCACCCTCCACGATCATCATCATCATCAGCAGCATCACCAAATTCCAATGGGTGTTGGAATTTGGTCCAATCACCACCACCCTTTTCACACACACCCCTCTTCCTCTTCTTCAACCAATTTCCTAACGGAGGTGTTGGGAGTCCAGTTTGAAGAAGACGAAGAGGAAGAGCTGGGAGCGATGAAGGAGATGATGTACCAGATGGCAGCGATGCAACCGGTGGACATAGACCCTGCCACCGTCAGAAAACCAAAGAGGCGAAACGTCCGCATAAGCGATGACCCTCAGAGTGTGGCTGCACGCCACAGAAGAGAGAAGATCAGTGAGAAAATCCGCATCCTCCAGAGACTTGTCCCCGGTGGAACCAAAATGGACACTGCTTCCATGCTTGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATCAGGTTGCTTCAATCAACGCCACAAATTGATCCTAACTCTGATTGCCCTTTTGCACCAATTACATCGCACGCTTCCACCTCCATCAACAACCTGCCTCTTGGAATGGATTTCAACGCCACAGTTCATGCCCATGCCGCTGATTGA 657 0.4871 MDTNLNTTFTNVNTTYNHQTMPTDQHNITLHDHHHHQQHHQIPMGVGIWSNHHHPFHTHPSSSSSTNFLTEVLGVQFEEDEEEELGAMKEMMYQMAAMQPVDIDPATVRKPKRRNVRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTPQIDPNSDCPFAPITSHASTSINNLPLGMDFNATVHAHAAD* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1541 218 Pfam Helix-loop-helix DNA-binding domain 128 167 IPR011598 GO:0046983
Pvu9g1541 218 CDD bHLH_AtIND_like 119 176 - -
Pvu9g1541 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 118 167 IPR011598 GO:0046983
Pvu9g1541 218 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 190 - -
Pvu9g1541 218 SMART finulus 124 173 IPR011598 GO:0046983
Pvu9g1541 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 177 IPR036638 GO:0046983
Pvu9g1541 218 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 21 190 IPR045843 GO:0003700|GO:0006355
Pvu9g1541 218 Gene3D - 121 181 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1541 Pvu-Chr9 21794517 21795480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1541 87 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 79.787 1.59e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu9g1541 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1541 - - pvu:PHAVU_009G149200g 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1541 9 21794517 21795480 Pvu9g1541 9 21794517 21795480 ECH
Pvu2g2787 2 43628586 43629926 Pvu9g1541 9 21794517 21795480 PCT