Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1540 ATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGTTGATCCTGAATTTTCACCTGATAATAGTAAGCAATTACGGTCTGGGTGGTCCAATGCAGATGTTGCTGGTAGCAATAGTTCAAAGTGGTCATATTTGGAAGGAAGTGATAAATTAAAGCCTGCTATGGGATTTTCATCCAAGGAACCTTTTTCCGGAGGCAGAGGTTCACATAAAGATGATGTTATGAATAAAGAGTATGGAGGTTTGGATGCAACAATGGAATGGGATGAGGATGGAAGCTACAGCAAAAAAATTTCTCCTGGATCTGAGGAATGGAAACCTAAGAGACATAGTCAATCTCCTAAAAATGGTTGGAGCAGGTCAGTCAGGAGTCGAAGCAGGAGCCCTCCTCATAGTTTTAGGTGGGATTCAGGAGTCAATGACAGAAATAGAATGCGGTCTGGAGGATCGACACAACCATGTAGAGACTTTGCTGCTGGTAAATGTAGAAGAGGCAGCCATTGCCACTTTCTTCATGATAGTCAAAATCATGAGGATAGTTGGGAAAATAAGAGCAGGGAAGATGGAGCTCCAAGATATTCTGTTCCCCATGAGGGTAGAGACTATTCTCTTAAGAGTGGCAGATCTAATGAAGCTTGTACTAATTTTGCAAAGGGCAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATCATGACATTTCTGATGGACATGTTAAAGTTTCTGTGGATGAATTAACTAGAGAGAGGGAAATTGATAGAAGGCACAGAGATAGTTCTTTTGAGCAGGGAGGCGGGCATGGACCAAACCGTAGTAGTGATACTCTTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGCAGGAGCCCTAATAGAAGATTAAGAGATGATAGGTGGGCAAGTAATCCTGGTGGGGATCACCATAGGCTGGATAGACCGAAATTGAGTGATTCAGATAGTCCTAATAGAAGGCCAAGGGATGATAGGTGGGGTTCAGATGGTAACAAGGCTGATGCAGATAAAGTTTGGGACAGTCCAAAGTGGAATGATACAGTTGCTGTCTCTGATTCAGCAAAGCTGGTTGAGGACAAAAGTGAAAATGTTGGTGCCGCAGAGCCAGGATTCACTCCTTTACCTACAAGGTATGGATGGAGTCATAATTTGGATAAGAGCAGAGTGCATGGTGAGCAACCTTTTTCAAGTGAAAGAAAGGAAGTTGACAGTTGGGTATCAGGAAATACTGCTACCAACGTTCATGTTTCCCAGTCAATAGGTACAGACATATGGTTGGGTGATACAAAAATGTCTCCTGATTGGCATTACAGGGTGGGATCTTCCAACAGCATTGAAGAAAAGCATGAACAAAATAAGCGTGGGGTAAAACAAGGTGGTACGTATTTAGCCACCTCTGAACGTGACAGAATACAAATTGCTGCAGGACAAGGCATTAATCAGAATGCAGAGAGTTTGAATCCTTTGCATTCTTCAGGCTTGCAAGCAGTTGGGCAAAGTCAGGTACCAGTTCCGATTCTACCTTCAAAGGGAGGAATCATTGATGGTATGCCAAACCAGGAAGTCTCTACTGAGAAAAAGTACACTGCTGAACCAAATATCATGGATGCAGGCTTATCACAAGTTAGTTCGAGAAATCCTCCTCCCACTGAGAATCTGGTAGGCCAAGAACAGCTTGCTCAGCTGACCAATCTCTCAGCCTCTCTGGCCCATATCCTTGGGACAGGACAACAGCTGCCACAACTTTATGCTGCTTTAAATTCTCACTATGCCAAGGACGCATCCTCCCTAGCAAAAGCTGAGGTGTCTGCTATGCCTGTTTCCAATACATTCATCCGCCCTGATCCTGCTGTGCCTGCTTCGAATACATTCATCCACCCTGATCCTGCTGTTGGACTCCCGAAGCCGTATGATCCAATGTGTGATAGTGTTGAGCAAAAGAGTGCTGTTGCAAGTGGGATACCCCCATCCATTCCTCCAAGCAAAAGAGTTGCAGAAGATGTACTGGAAATTCCATTACAGTTGTCCAACACATCAAGACAAAATCGTGGTGATTCTTCTAAGGCCGCTGGCTCAGAAGAACTAGTCAAGAGTGATACTCTAATCCAGTTGCAACCAGGTCAAAACACAGGAGTTGATAAGGATAATAACAAGGAAGTGTTACCTGAGGAAAGACACAAATCTCGAGATGATCCTAAAAGTACCAAAGAGAATGGTCCTTTGGAAAATATGGAGCAAACTGGAGGTCCTGACGACGCCAAGAAAACAAAGGATTTGAAGGGGATTCGTGCATTTAAATTTGCACTGGTTGAGTTTGTTAAGGAGCTTTTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGATGATTATAAAACAATCGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGCCAATATTCCTCAGACACAAGAGAAAATTGACAACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGTTAGTGGTGGTTAG 2577 0.4296 MSGSGKKRSSKWDLRVDPEFSPDNSKQLRSGWSNADVAGSNSSKWSYLEGSDKLKPAMGFSSKEPFSGGRGSHKDDVMNKEYGGLDATMEWDEDGSYSKKISPGSEEWKPKRHSQSPKNGWSRSVRSRSRSPPHSFRWDSGVNDRNRMRSGGSTQPCRDFAAGKCRRGSHCHFLHDSQNHEDSWENKSREDGAPRYSVPHEGRDYSLKSGRSNEACTNFAKGRCRMGASCKFVHHDISDGHVKVSVDELTREREIDRRHRDSSFEQGGGHGPNRSSDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRWASNPGGDHHRLDRPKLSDSDSPNRRPRDDRWGSDGNKADADKVWDSPKWNDTVAVSDSAKLVEDKSENVGAAEPGFTPLPTRYGWSHNLDKSRVHGEQPFSSERKEVDSWVSGNTATNVHVSQSIGTDIWLGDTKMSPDWHYRVGSSNSIEEKHEQNKRGVKQGGTYLATSERDRIQIAAGQGINQNAESLNPLHSSGLQAVGQSQVPVPILPSKGGIIDGMPNQEVSTEKKYTAEPNIMDAGLSQVSSRNPPPTENLVGQEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHYAKDASSLAKAEVSAMPVSNTFIRPDPAVPASNTFIHPDPAVGLPKPYDPMCDSVEQKSAVASGIPPSIPPSKRVAEDVLEIPLQLSNTSRQNRGDSSKAAGSEELVKSDTLIQLQPGQNTGVDKDNNKEVLPEERHKSRDDPKSTKENGPLENMEQTGGPDDAKKTKDLKGIRAFKFALVEFVKELLKPTWKEGQITKDDYKTIVKKVVDKVTGSMQGANIPQTQEKIDNYLSFSKPKLNKLVQVSGG* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1540 858 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 854 - -
Pvu9g1540 858 SUPERFAMILY CCCH zinc finger 276 299 IPR036855 GO:0046872
Pvu9g1540 858 Pfam RNA-binding, Nab2-type zinc finger 215 234 - -
Pvu9g1540 858 MobiDBLite consensus disorder prediction 23 48 - -
Pvu9g1540 858 MobiDBLite consensus disorder prediction 718 735 - -
Pvu9g1540 858 MobiDBLite consensus disorder prediction 253 276 - -
Pvu9g1540 858 MobiDBLite consensus disorder prediction 177 204 - -
Pvu9g1540 858 MobiDBLite consensus disorder prediction 8 22 - -
Pvu9g1540 858 MobiDBLite consensus disorder prediction 305 360 - -
Pvu9g1540 858 MobiDBLite consensus disorder prediction 115 136 - -
Pvu9g1540 858 Gene3D - 147 252 - -
Pvu9g1540 858 MobiDBLite consensus disorder prediction 695 776 - -
Pvu9g1540 858 Pfam CCCH-type zinc finger 279 299 IPR041367 -
Pvu9g1540 858 ProSiteProfiles Zinc finger C3H1-type profile. 151 178 IPR000571 GO:0046872
Pvu9g1540 858 MobiDBLite consensus disorder prediction 92 114 - -
Pvu9g1540 858 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 854 - -
Pvu9g1540 858 ProSiteProfiles Zinc finger C3H1-type profile. 274 301 IPR000571 GO:0046872
Pvu9g1540 858 MobiDBLite consensus disorder prediction 736 758 - -
Pvu9g1540 858 ProSiteProfiles Zinc finger C3H1-type profile. 210 238 IPR000571 GO:0046872
Pvu9g1540 858 Gene3D - 269 329 - -
Pvu9g1540 858 SMART c3hfinal6 151 177 IPR000571 GO:0046872
Pvu9g1540 858 SMART c3hfinal6 211 236 IPR000571 GO:0046872
Pvu9g1540 858 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Pvu9g1540 858 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 176 IPR000571 GO:0046872
Pvu9g1540 858 MobiDBLite consensus disorder prediction 1 157 - -
Pvu9g1540 858 MobiDBLite consensus disorder prediction 378 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1540 Pvu-Chr9 21776712 21784902 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu9g1540 zf-CCCH 3.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1540 - K22909 gmx:100783856 1390.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1540 9 21776712 21784902 Pvu9g1540 9 21776712 21784902 ECH