Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1535 ATGGCCTCAGCCACCTCTTCGCCTACGGCTCAGAGGCACGTTGGCTTCAGCCACCGCACGCAGGCGCCGTTCCAGCTCGACGACTCCTCCAGCCAGCTCCATGACGAGCTCCATGACGACTCGCCGCCGGTGAGGAAGTACCGGCTGATGTCAGACATAATGGCGCGCGCCCAGTACGCGGTGGTGGAGAGAGAGACGTATAGTGATCTGCTGTGCGAGCAATGCGGTTCCGGCGAGGTGTCGGAGGAGCTGCTTCTCTGCGACAAATGCGACAAAGGCTTCCACATGAAATGCGTGAGGCCGATTGTTGTGAGGATTCCGATTGGATCGTGGCTTTGTCCTAAGTGTCAGGGAGGGAAGAGAGTGCGGACTTTCTCGCAGAAGAGGATAATTGATTTCTTCGGGATTGGTAGGAGTTATTTTTATGCGGATGACAAGTGTTCTTCTCAGGGTTTTTGGACAATCTGTCTCATGCAATGTCTATCTGAAATCTATTGTTTGAAGGCAAAAGAGGCCAATCAAATGTCTAAAGAGGCCAAGAAGCGTAGGAAACGTTCAAGACCTCTGGTATTACATAAGAAAAAAAGGAGGTTGTTACCATTTGTTCCTACAAAAGATCCTGTCCAGAGATTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCATCAAATATAGAATTCTGTGATCACCTCACATACTCGCCTGGAATGGCTCCTAGATCTGCGAATCGATCCGCATTCGAGAACGGTGACATGCAGATTCTTTGCAAAGAAGACTTGGAGACAGTAGAACACTGCATTGCTATGTCTAAACGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGATTTGTGTCAAGGTTATACTGTTGAGGCTGATGACCTAATCAAGGATATGACAGTTGTTGCTGAATACACTGGCGATGTGGATTACCTTCACAACCGGGAACGTGATGATTGTGACAGTATGATGACCCTTCTTCTTGGAAGAGAAAGTTCTCAAAGTCTTGTTATTTGTGCTGATAAACGTGGAAACGTTGCTCGCTTTATAAGCGGGATAAACAATCATACACAGGAAGGTAGGAAGAAGCAAAACTGCAAATGTGTGAGATACAATGTTGGTGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTTTAAGGGAGAAAGGCTTTATTATGATTATAATGGTTATGAGTATCACTATCCGACTCATAATTTTGTCTGA 1236 0.462 MASATSSPTAQRHVGFSHRTQAPFQLDDSSSQLHDELHDDSPPVRKYRLMSDIMARAQYAVVERETYSDLLCEQCGSGEVSEELLLCDKCDKGFHMKCVRPIVVRIPIGSWLCPKCQGGKRVRTFSQKRIIDFFGIGRSYFYADDKCSSQGFWTICLMQCLSEIYCLKAKEANQMSKEAKKRRKRSRPLVLHKKKRRLLPFVPTKDPVQRLKQMGSLASALTASNIEFCDHLTYSPGMAPRSANRSAFENGDMQILCKEDLETVEHCIAMSKRGEFPPFMVVYDLCQGYTVEADDLIKDMTVVAEYTGDVDYLHNRERDDCDSMMTLLLGRESSQSLVICADKRGNVARFISGINNHTQEGRKKQNCKCVRYNVGGECRVFLVATRDIFKGERLYYDYNGYEYHYPTHNFV* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1535 411 Gene3D SET domain 182 411 IPR046341 -
Pvu9g1535 411 Pfam PHD-finger 72 117 IPR019787 -
Pvu9g1535 411 PANTHER HISTONE ACETYLTRANSFERASE 29 409 - -
Pvu9g1535 411 SUPERFAMILY FYVE/PHD zinc finger 62 122 IPR011011 -
Pvu9g1535 411 ProSitePatterns Zinc finger PHD-type signature. 72 116 IPR019786 -
Pvu9g1535 411 SMART PHD_3 71 117 IPR001965 -
Pvu9g1535 411 Pfam SET domain 84 399 IPR001214 GO:0005515
Pvu9g1535 411 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 29 409 - -
Pvu9g1535 411 SUPERFAMILY SET domain 269 400 IPR046341 -
Pvu9g1535 411 ProSiteProfiles SET domain profile. 277 399 IPR001214 GO:0005515
Pvu9g1535 411 ProSiteProfiles Zinc finger PHD-type profile. 69 119 IPR019787 -
Pvu9g1535 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 130 IPR013083 -
Pvu9g1535 411 CDD SET_ATXR5_6-like 274 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1535 Pvu-Chr9 21733655 21737332 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1535 43 125 C2H2 Transcription Factor Family AT3G01460 36.471 3.13e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu9g1535 SET 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1535 K24406 - gmx:100785817 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1535 9 21733655 21737332 Pvu9g1535 9 21733655 21737332 ECH